Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014717A_C01 KMC014717A_c01
(593 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_192705.1| AX110P -like protein; protein id: At4g09670.1, ... 195 4e-49
gb|AAK76525.2| putative AX110P protein [Arabidopsis thaliana] 195 4e-49
pir||T14319 protein AX110P - carrot gi|285739|dbj|BAA03455.1| AX... 144 1e-33
ref|NP_564441.1| expressed protein; protein id: At1g34200.1, sup... 139 3e-32
pir||C86466 hypothetical protein F23M19.12 [imported] - Arabidop... 139 3e-32
>ref|NP_192705.1| AX110P -like protein; protein id: At4g09670.1, supported by cDNA:
19582. [Arabidopsis thaliana] gi|7485600|pir||T04014
hypothetical protein F17A8.20 - Arabidopsis thaliana
gi|4538897|emb|CAB39634.1| AX110P-like protein
[Arabidopsis thaliana] gi|7267662|emb|CAB78090.1|
AX110P-like protein [Arabidopsis thaliana]
gi|21554042|gb|AAM63123.1| AX110P-like protein
[Arabidopsis thaliana] gi|26983872|gb|AAN86188.1|
putative AX110P protein [Arabidopsis thaliana]
Length = 362
Score = 195 bits (495), Expect = 4e-49
Identities = 90/135 (66%), Positives = 113/135 (83%)
Frame = -3
Query: 591 CGASLPWEDGKVATFHCSFLSNLTMDITAVGTKGTLHVHDFIIPYEEKEASFYASSESSF 412
CGASL WEDG+ AT +CSFL+NLTM+ITA+GTKGTL VHDFIIPY+E EASF S+++ F
Sbjct: 225 CGASLSWEDGRTATIYCSFLANLTMEITAIGTKGTLRVHDFIIPYKETEASFTTSTKAWF 284
Query: 411 DDLVTRWSSPPSKHTIKTDLPQEALMVSEFARLVAEIKFNNSKPEKKWPTISRKTQLVLD 232
+DLVT W SPPS+HT+KT+LPQEA MV EFARLV EIK N +KP+ WP+ISRKTQLV+D
Sbjct: 285 NDLVTAWVSPPSEHTVKTELPQEACMVREFARLVGEIKNNGAKPDGYWPSISRKTQLVVD 344
Query: 231 AVKASIERGLEPVQI 187
AVK S+++ + + +
Sbjct: 345 AVKESVDKNYQQISL 359
>gb|AAK76525.2| putative AX110P protein [Arabidopsis thaliana]
Length = 338
Score = 195 bits (495), Expect = 4e-49
Identities = 90/135 (66%), Positives = 113/135 (83%)
Frame = -3
Query: 591 CGASLPWEDGKVATFHCSFLSNLTMDITAVGTKGTLHVHDFIIPYEEKEASFYASSESSF 412
CGASL WEDG+ AT +CSFL+NLTM+ITA+GTKGTL VHDFIIPY+E EASF S+++ F
Sbjct: 201 CGASLSWEDGRTATIYCSFLANLTMEITAIGTKGTLRVHDFIIPYKETEASFTTSTKAWF 260
Query: 411 DDLVTRWSSPPSKHTIKTDLPQEALMVSEFARLVAEIKFNNSKPEKKWPTISRKTQLVLD 232
+DLVT W SPPS+HT+KT+LPQEA MV EFARLV EIK N +KP+ WP+ISRKTQLV+D
Sbjct: 261 NDLVTAWVSPPSEHTVKTELPQEACMVREFARLVGEIKNNGAKPDGYWPSISRKTQLVVD 320
Query: 231 AVKASIERGLEPVQI 187
AVK S+++ + + +
Sbjct: 321 AVKESVDKNYQQISL 335
>pir||T14319 protein AX110P - carrot gi|285739|dbj|BAA03455.1| AX110P [Daucus
carota] gi|740202|prf||2004427A embryogenesis-associated
protein
Length = 390
Score = 144 bits (362), Expect = 1e-33
Identities = 74/128 (57%), Positives = 90/128 (69%), Gaps = 2/128 (1%)
Frame = -3
Query: 591 CGASLPWEDGKVATFHCSFLSNLTMDITAVGTKGTLHVHDFIIPYEEKEASFYASSESSF 412
CGASL WEDGK AT +CSFL NLTMD+T VGTKGTLH+HDF IP+EE A+F ++
Sbjct: 228 CGASLHWEDGKTATLNCSFLENLTMDVTLVGTKGTLHMHDFNIPFEEGRATFSTGTKVGV 287
Query: 411 DDLVTRW--SSPPSKHTIKTDLPQEALMVSEFARLVAEIKFNNSKPEKKWPTISRKTQLV 238
+ SS PS ++ LPQE LM+ EF+RLVA IK N +KPEKKW T SRKTQL
Sbjct: 288 QMICQPGGRSSTPSIRSLLI-LPQECLMLKEFSRLVANIKSNGAKPEKKWATYSRKTQLT 346
Query: 237 LDAVKASI 214
+D +K S+
Sbjct: 347 MDPIKESV 354
>ref|NP_564441.1| expressed protein; protein id: At1g34200.1, supported by cDNA:
gi_13605868 [Arabidopsis thaliana]
gi|13605869|gb|AAK32920.1|AF367333_1 F23M19.12/F23M19.12
[Arabidopsis thaliana] gi|22137080|gb|AAM91385.1|
At1g34200/F23M19.12 [Arabidopsis thaliana]
Length = 352
Score = 139 bits (350), Expect = 3e-32
Identities = 73/133 (54%), Positives = 87/133 (64%)
Frame = -3
Query: 591 CGASLPWEDGKVATFHCSFLSNLTMDITAVGTKGTLHVHDFIIPYEEKEASFYASSESSF 412
CGA WEDG AT +CSFL+NLTM+ITA+GTKG+L VHDF+IPY E EA F S
Sbjct: 226 CGALFDWEDGVNATIYCSFLANLTMEITAIGTKGSLRVHDFVIPYMETEAVFTTSGGGCV 285
Query: 411 DDLVTRWSSPPSKHTIKTDLPQEALMVSEFARLVAEIKFNNSKPEKKWPTISRKTQLVLD 232
S+H + T+L QEA MV EFARLV EIK +KP+ W SR TQL++D
Sbjct: 286 -----------SEHKVMTELSQEACMVMEFARLVGEIKNRGAKPDGFWMRFSRNTQLLVD 334
Query: 231 AVKASIERGLEPV 193
AVK SI+ LEPV
Sbjct: 335 AVKESIDNNLEPV 347
>pir||C86466 hypothetical protein F23M19.12 [imported] - Arabidopsis thaliana
gi|5091625|gb|AAD39613.1|AC007454_12 Similar to
gb|D14605 AX110P embryogenesis-associated protein from
Daucus carota and is a member of the PF|01408
Oxidoreductase family. ESTs gb|Z35057, gb|T20683 and
gb|Z48399 come from this gene. [Arabidopsis thaliana]
Length = 450
Score = 139 bits (350), Expect = 3e-32
Identities = 73/133 (54%), Positives = 87/133 (64%)
Frame = -3
Query: 591 CGASLPWEDGKVATFHCSFLSNLTMDITAVGTKGTLHVHDFIIPYEEKEASFYASSESSF 412
CGA WEDG AT +CSFL+NLTM+ITA+GTKG+L VHDF+IPY E EA F S
Sbjct: 226 CGALFDWEDGVNATIYCSFLANLTMEITAIGTKGSLRVHDFVIPYMETEAVFTTSGGGCV 285
Query: 411 DDLVTRWSSPPSKHTIKTDLPQEALMVSEFARLVAEIKFNNSKPEKKWPTISRKTQLVLD 232
S+H + T+L QEA MV EFARLV EIK +KP+ W SR TQL++D
Sbjct: 286 -----------SEHKVMTELSQEACMVMEFARLVGEIKNRGAKPDGFWMRFSRNTQLLVD 334
Query: 231 AVKASIERGLEPV 193
AVK SI+ LEPV
Sbjct: 335 AVKESIDNNLEPV 347
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 505,388,892
Number of Sequences: 1393205
Number of extensions: 10834979
Number of successful extensions: 25997
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 25267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25989
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22854740960
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
