Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014713A_C01 KMC014713A_c01
(624 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197376.1| putative protein; protein id: At5g18750.1 [Arab... 67 2e-10
dbj|BAB61155.1| B1045D11.23 [Oryza sativa (japonica cultivar-gro... 52 5e-06
dbj|BAB90832.1| heat shock protein-like [Oryza sativa (japonica ... 51 1e-05
ref|NP_200127.1| DnaJ protein-like; protein id: At5g53150.1 [Ara... 50 2e-05
gb|AAK52144.1|AC084380_17 putative heat shock protein [Oryza sat... 48 9e-05
>ref|NP_197376.1| putative protein; protein id: At5g18750.1 [Arabidopsis thaliana]
Length = 884
Score = 67.0 bits (162), Expect = 2e-10
Identities = 36/70 (51%), Positives = 46/70 (65%)
Frame = -2
Query: 617 IDVLILEHVPDFSSVFRAKSNLGPSVNLRKISKKELLRFSHQIPGFRLTEEEHANLRGFW 438
I+V++LE V F SVF+ K G V +KI + ELLRFSH +P FRLT E LRG+
Sbjct: 812 IEVMLLEQVDGFISVFKEKLEGGIDVK-KKIPRCELLRFSHYVPAFRLTGERDGALRGYV 870
Query: 437 ELDPGALPVH 408
ELDP A P++
Sbjct: 871 ELDPSAFPLN 880
Score = 40.4 bits (93), Expect = 0.019
Identities = 29/71 (40%), Positives = 38/71 (52%), Gaps = 1/71 (1%)
Frame = -2
Query: 623 VFIDVLILEHVPDFSSVFRAKSNLGPSVNLRKISKKELLRFSHQIPGFRLTEEEHANLR- 447
V I V L + F+SVF + G S ++ I ELLRFSH IP +LT +E +
Sbjct: 554 VAIQVAFLRKIKGFTSVFCRIAPGGGSDTIQ-IPPHELLRFSHSIPSTKLTGKEGNGVPI 612
Query: 446 GFWELDPGALP 414
G +E D ALP
Sbjct: 613 GSYEFDTAALP 623
>dbj|BAB61155.1| B1045D11.23 [Oryza sativa (japonica cultivar-group)]
gi|14587233|dbj|BAB61158.1| B1111C09.3 [Oryza sativa
(japonica cultivar-group)]
Length = 1007
Score = 52.4 bits (124), Expect = 5e-06
Identities = 29/66 (43%), Positives = 39/66 (58%)
Frame = -2
Query: 611 VLILEHVPDFSSVFRAKSNLGPSVNLRKISKKELLRFSHQIPGFRLTEEEHANLRGFWEL 432
VL+L V + +VF+ S G +I E +RFSH IP FRLT+E L GF+EL
Sbjct: 937 VLLLTRVDGYRAVFKPDSVRGTL----EIPTNENIRFSHLIPSFRLTKENGGKLCGFYEL 992
Query: 431 DPGALP 414
DP ++P
Sbjct: 993 DPASVP 998
Score = 36.2 bits (82), Expect = 0.36
Identities = 27/64 (42%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = -2
Query: 602 LEHVPDFSSVFRAKSNLGPSVNLRKISKKELLRFSHQIPGFRLTEEEHANLR-GFWELDP 426
L + F S+F AK PS I E+LRFSH IP FR +E + GF ELD
Sbjct: 653 LVKIKGFVSLF-AKVKEKPSF---VIPPSEMLRFSHSIPFFRTKGDEKVGVAGGFLELDT 708
Query: 425 GALP 414
+LP
Sbjct: 709 ASLP 712
>dbj|BAB90832.1| heat shock protein-like [Oryza sativa (japonica cultivar-group)]
Length = 744
Score = 51.2 bits (121), Expect = 1e-05
Identities = 35/80 (43%), Positives = 46/80 (56%), Gaps = 1/80 (1%)
Frame = -2
Query: 617 IDVLILEHVPDFSSVFRAKSNLGPSVNLRKISKKELLRFSHQIPGFRLTEEEHANL-RGF 441
I V+ + VP F SVF L P+ + R I K+E+LRFSHQ+P LT EE N +G
Sbjct: 666 ISVMPIVKVPGFVSVFTPL--LDPTKS-RTIPKEEMLRFSHQVPFHVLTGEEAKNSPKGC 722
Query: 440 WELDPGALPVHYYHV*EERD 381
+ELDPG+ P V + D
Sbjct: 723 YELDPGSTPKELLQVVPQSD 742
>ref|NP_200127.1| DnaJ protein-like; protein id: At5g53150.1 [Arabidopsis thaliana]
gi|9757996|dbj|BAB08418.1| DnaJ protein-like
[Arabidopsis thaliana]
Length = 755
Score = 50.4 bits (119), Expect = 2e-05
Identities = 30/69 (43%), Positives = 41/69 (58%), Gaps = 1/69 (1%)
Frame = -2
Query: 617 IDVLILEHVPDFSSVFRAKSNLGPSVNLRKISKKELLRFSHQIPGFRLTEEEHANL-RGF 441
+ V +L F VFR + + +RKI+K+E+LRFSHQ+P + LT +E N GF
Sbjct: 635 LTVALLLKAEGFRVVFRRCTE---KLGVRKIAKEEMLRFSHQVPHYILTGKEADNAPEGF 691
Query: 440 WELDPGALP 414
ELDP A P
Sbjct: 692 LELDPAATP 700
>gb|AAK52144.1|AC084380_17 putative heat shock protein [Oryza sativa]
Length = 748
Score = 48.1 bits (113), Expect = 9e-05
Identities = 26/68 (38%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Frame = -2
Query: 617 IDVLILEHVPDFSSVFRAKSNLGPSVNLRKISKKELLRFSHQIPGFRLTEEEHANL-RGF 441
I V+ L V F +VF+ +L ++KI K+E+ RFSH++P +R++ EE N+ +
Sbjct: 663 ISVIPLVKVAGFRTVFQRNQDLNA---IKKIPKEEMFRFSHEVPFYRMSGEEAPNVPKDS 719
Query: 440 WELDPGAL 417
+ELDP A+
Sbjct: 720 YELDPAAI 727
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 528,363,893
Number of Sequences: 1393205
Number of extensions: 11388906
Number of successful extensions: 32929
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 25681
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29464
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
