Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014706A_C01 KMC014706A_c01
(503 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK38727.1|AF369707_1 importin alpha 2 [Capsicum annuum] 114 8e-25
gb|AAK70912.1|AC087551_11 putative impotin alpha 1b [Oryza sativa] 110 7e-24
dbj|BAA88950.1| importin alpha 1b [Oryza sativa (japonica cultiv... 108 3e-23
pir||T52098 probable nuclear transport factor importin alpha [im... 104 6e-22
gb|AAK32824.1|AF361811_1 AT3g06720/F3E22_14 [Arabidopsis thalian... 104 6e-22
>gb|AAK38727.1|AF369707_1 importin alpha 2 [Capsicum annuum]
Length = 529
Score = 114 bits (284), Expect = 8e-25
Identities = 51/73 (69%), Positives = 60/73 (81%)
Frame = -1
Query: 503 NLYAQMIEDADGLEKIDNLQNHDNNEIYEKVVKILETYWSEDVDETLPSSDGAPPEFNFG 324
N YAQ+ +DA+GLEKI+NLQ+HDNNEIYEK VKILETYW E+ DETLP+ DG EFNFG
Sbjct: 456 NYYAQLTDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEEEDETLPAGDGTQNEFNFG 515
Query: 323 SNNPSVPSGGFNF 285
N+ +PSGGF F
Sbjct: 516 GNDIQLPSGGFKF 528
>gb|AAK70912.1|AC087551_11 putative impotin alpha 1b [Oryza sativa]
Length = 534
Score = 110 bits (276), Expect = 7e-24
Identities = 49/73 (67%), Positives = 60/73 (82%)
Frame = -1
Query: 503 NLYAQMIEDADGLEKIDNLQNHDNNEIYEKVVKILETYWSEDVDETLPSSDGAPPEFNFG 324
N YAQMI+DA+GLEKI+NLQ+HDN EIYEK VK+LE+YW E+ D+ +PS D A FNFG
Sbjct: 461 NSYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKMLESYWLEEEDDAMPSGDNAQNGFNFG 520
Query: 323 SNNPSVPSGGFNF 285
+ P+VPSGGFNF
Sbjct: 521 NQQPNVPSGGFNF 533
>dbj|BAA88950.1| importin alpha 1b [Oryza sativa (japonica cultivar-group)]
Length = 534
Score = 108 bits (270), Expect = 3e-23
Identities = 48/73 (65%), Positives = 59/73 (80%)
Frame = -1
Query: 503 NLYAQMIEDADGLEKIDNLQNHDNNEIYEKVVKILETYWSEDVDETLPSSDGAPPEFNFG 324
N YAQMI+DA+GLEKI+NLQ+HDN EIYEK VK+LE+YW E+ D+ +PS D A FN G
Sbjct: 461 NSYAQMIDDAEGLEKIENLQSHDNTEIYEKAVKMLESYWLEEEDDAMPSGDNAQNGFNLG 520
Query: 323 SNNPSVPSGGFNF 285
+ P+VPSGGFNF
Sbjct: 521 NQQPNVPSGGFNF 533
>pir||T52098 probable nuclear transport factor importin alpha [imported] -
Arabidopsis thaliana gi|2950210|emb|CAA74965.1| Importin
alpha-like protein [Arabidopsis thaliana]
Length = 535
Score = 104 bits (259), Expect = 6e-22
Identities = 49/74 (66%), Positives = 59/74 (79%), Gaps = 1/74 (1%)
Frame = -1
Query: 503 NLYAQMIEDADGLEKIDNLQNHDNNEIYEKVVKILETYWSEDVDETLPSSDGAPPEFNF- 327
N YAQ+I+DA+GLEKI+NLQ+HDN+EIYEK VKILETYW E+ DETLP D + F F
Sbjct: 461 NFYAQLIDDAEGLEKIENLQSHDNSEIYEKAVKILETYWLEEEDETLPPGDPSAQGFQFG 520
Query: 326 GSNNPSVPSGGFNF 285
G N+ +VP GGFNF
Sbjct: 521 GGNDAAVPPGGFNF 534
>gb|AAK32824.1|AF361811_1 AT3g06720/F3E22_14 [Arabidopsis thaliana]
gi|16974501|gb|AAL31160.1| AT3g06720/F3E22_14
[Arabidopsis thaliana]
Length = 535
Score = 104 bits (259), Expect = 6e-22
Identities = 49/74 (66%), Positives = 59/74 (79%), Gaps = 1/74 (1%)
Frame = -1
Query: 503 NLYAQMIEDADGLEKIDNLQNHDNNEIYEKVVKILETYWSEDVDETLPSSDGAPPEFNF- 327
N YAQ+I+DA+GLEKI+NLQ+HDN+EIYEK VKILETYW E+ DETLP D + F F
Sbjct: 461 NFYAQLIDDAEGLEKIENLQSHDNSEIYEKAVKILETYWLEEEDETLPPGDPSAQGFQFG 520
Query: 326 GSNNPSVPSGGFNF 285
G N+ +VP GGFNF
Sbjct: 521 GGNDAAVPPGGFNF 534
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 468,782,507
Number of Sequences: 1393205
Number of extensions: 10966352
Number of successful extensions: 34350
Number of sequences better than 10.0: 137
Number of HSP's better than 10.0 without gapping: 32359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34262
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
