Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014704A_C01 KMC014704A_c01
(498 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN32639.1|AF416700_2 hypothetical protein [Empedobacter brevis] 38 0.072
ref|NP_702529.1| hypothetical protein [Plasmodium falciparum 3D7... 34 0.79
ref|NP_296392.1| exodeoxyribonuclease V, gamma subunit, putative... 33 1.8
gb|AAM63764.1| 1-aminocyclopropane-1-carboxylate oxidase, putati... 33 1.8
ref|NP_565154.1| 1-aminocyclopropane-1-carboxylate oxidase, puta... 33 1.8
>gb|AAN32639.1|AF416700_2 hypothetical protein [Empedobacter brevis]
Length = 229
Score = 37.7 bits (86), Expect = 0.072
Identities = 25/66 (37%), Positives = 39/66 (58%)
Frame = -3
Query: 487 TNLSQMRKEWFVLKDLNSLLEDLRKLKWDCNKEEQEELNEDLWDELNEELGNVRWDEIHQ 308
TNL + + LKDLN L ++L + NKE +ELN++L ELN+EL E+++
Sbjct: 169 TNLDEQK----ALKDLNKELN--KELNKELNKELNKELNKELNKELNKELNKELNKELNK 222
Query: 307 ALMSLR 290
L +L+
Sbjct: 223 ELNTLK 228
Score = 32.3 bits (72), Expect = 3.0
Identities = 19/48 (39%), Positives = 29/48 (59%)
Frame = -3
Query: 445 DLNSLLEDLRKLKWDCNKEEQEELNEDLWDELNEELGNVRWDEIHQAL 302
+LN+ D +K D NKE +ELN++L ELN+EL E+++ L
Sbjct: 165 NLNTTNLDEQKALKDLNKELNKELNKELNKELNKELNKELNKELNKEL 212
>ref|NP_702529.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497714|gb|AAN37253.1|AE014826_52 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 579
Score = 34.3 bits (77), Expect = 0.79
Identities = 14/34 (41%), Positives = 24/34 (70%)
Frame = -3
Query: 403 DCNKEEQEELNEDLWDELNEELGNVRWDEIHQAL 302
DCNKE EE+NE++ +E++EE+ +EI + +
Sbjct: 99 DCNKEINEEINEEINEEIDEEINEEINEEIDEEM 132
>ref|NP_296392.1| exodeoxyribonuclease V, gamma subunit, putative [Chlamydia
muridarum] gi|11281728|pir||H81751 exodeoxyribonuclease
V, gamma chain, probable TC0008 [imported] - Chlamydia
muridarum (strain Nigg) gi|7190048|gb|AAF38901.1|
exodeoxyribonuclease V, gamma subunit, putative
[Chlamydia muridarum]
Length = 1025
Score = 33.1 bits (74), Expect = 1.8
Identities = 19/47 (40%), Positives = 27/47 (57%)
Frame = +3
Query: 324 HLTFPNSSFNSSHKSSFNSSCSSLLQSHLSFLKSSSKEFKSFKTNHS 464
H+T P + +N +SSFNSS S + +HL L S K+F +F S
Sbjct: 114 HITLPLNIYNLLRESSFNSS-SDVSYAHLQKLSSLFKKFYTFSQEPS 159
>gb|AAM63764.1| 1-aminocyclopropane-1-carboxylate oxidase, putative [Arabidopsis
thaliana]
Length = 307
Score = 33.1 bits (74), Expect = 1.8
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 15/78 (19%)
Frame = -3
Query: 490 ITNLSQMRKEWFVLKDLN-----SLLEDLRKLKWDCNKEEQEE----------LNEDLWD 356
++ +++ +EW + +N LL ++KL DC K E+EE LNE +
Sbjct: 20 LSEIARACEEWGFFQLVNHGIPLELLNKVKKLSSDCYKTEREEAFKTSNPVKLLNELVQK 79
Query: 355 ELNEELGNVRWDEIHQAL 302
E+L NV W+++ L
Sbjct: 80 NSGEKLENVDWEDVFTLL 97
>ref|NP_565154.1| 1-aminocyclopropane-1-carboxylate oxidase, putative; protein id:
At1g77330.1, supported by cDNA: 269582. [Arabidopsis
thaliana]
Length = 307
Score = 33.1 bits (74), Expect = 1.8
Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 15/78 (19%)
Frame = -3
Query: 490 ITNLSQMRKEWFVLKDLN-----SLLEDLRKLKWDCNKEEQEE----------LNEDLWD 356
++ +++ +EW + +N LL ++KL DC K E+EE LNE +
Sbjct: 20 LSEIARACEEWGFFQLVNHGIPLELLNKVKKLSSDCYKTEREEAFKTSNPVKLLNELVQK 79
Query: 355 ELNEELGNVRWDEIHQAL 302
E+L NV W+++ L
Sbjct: 80 NSGEKLENVDWEDVFTLL 97
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 400,460,825
Number of Sequences: 1393205
Number of extensions: 7878182
Number of successful extensions: 23846
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 22497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23698
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
