Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014701A_C01 KMC014701A_c01
(582 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194420.1| glutamine amidotransferase/cyclase; protein id:... 108 4e-23
dbj|BAC43102.1| putative glutamine amidotransferase/cyclase [Ara... 108 4e-23
pdb|1JVN|A Chain A, Crystal Structure Of Imidazole Glycerol Phos... 79 3e-14
emb|CAA49469.1| glutamine amidotransferase [Saccharomyces cerevi... 79 3e-14
ref|NP_009807.1| glutamine amidotransferase:cyclase, also called... 79 3e-14
>ref|NP_194420.1| glutamine amidotransferase/cyclase; protein id: At4g26900.1,
supported by cDNA: gi_3219163 [Arabidopsis thaliana]
gi|12643854|sp|Q9SZ30|HIS5_ARATH Imidazole glycerol
phosphate synthase hisHF, chloroplast precursor (IGP
synthase) (ImGP synthase) (IGPS) [Includes: Glutamine
amidotransferase ; Cyclase ] gi|7484804|pir||T04813
amidotransferase (EC 2.4.2.-) / cyclase - Arabidopsis
thaliana gi|4455213|emb|CAB36536.1| glutamine
amidotransferase/cyclase [Arabidopsis thaliana]
gi|7269543|emb|CAB79545.1| glutamine
amidotransferase/cyclase [Arabidopsis thaliana]
Length = 592
Score = 108 bits (271), Expect = 4e-23
Identities = 56/67 (83%), Positives = 59/67 (87%)
Frame = -1
Query: 582 DLIKLISDAVSIPVIASSGAGVPQHFSEVFGTTNASAALAAAIFHRKEVPIQSVKEHLLK 403
DL+KLISD+V IPVIASSGAG P HFSEVF TNASAALAA IFHRKEVPIQSVKEHL +
Sbjct: 526 DLVKLISDSVGIPVIASSGAGTPDHFSEVFEKTNASAALAAGIFHRKEVPIQSVKEHLQE 585
Query: 402 EGIEVRI 382
E IEVRI
Sbjct: 586 ERIEVRI 592
>dbj|BAC43102.1| putative glutamine amidotransferase/cyclase [Arabidopsis thaliana]
gi|29028958|gb|AAO64858.1| At4g26900 [Arabidopsis
thaliana]
Length = 592
Score = 108 bits (271), Expect = 4e-23
Identities = 56/67 (83%), Positives = 59/67 (87%)
Frame = -1
Query: 582 DLIKLISDAVSIPVIASSGAGVPQHFSEVFGTTNASAALAAAIFHRKEVPIQSVKEHLLK 403
DL+KLISD+V IPVIASSGAG P HFSEVF TNASAALAA IFHRKEVPIQSVKEHL +
Sbjct: 526 DLVKLISDSVGIPVIASSGAGTPDHFSEVFEKTNASAALAAGIFHRKEVPIQSVKEHLQE 585
Query: 402 EGIEVRI 382
E IEVRI
Sbjct: 586 ERIEVRI 592
>pdb|1JVN|A Chain A, Crystal Structure Of Imidazole Glycerol Phosphate
Synthase: A Tunnel Through A (BetaALPHA)8 BARREL JOINS
TWO ACTIVE Sites gi|16975312|pdb|1JVN|B Chain B, Crystal
Structure Of Imidazole Glycerol Phosphate Synthase: A
Tunnel Through A (BetaALPHA)8 BARREL JOINS TWO ACTIVE
Sites
Length = 555
Score = 79.3 bits (194), Expect = 3e-14
Identities = 38/67 (56%), Positives = 49/67 (72%)
Frame = -1
Query: 582 DLIKLISDAVSIPVIASSGAGVPQHFSEVFGTTNASAALAAAIFHRKEVPIQSVKEHLLK 403
+LI+ + DAV IPVIASSGAGVP+HF E F T A A L A +FHR E + VKE+LL+
Sbjct: 486 ELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKEYLLE 545
Query: 402 EGIEVRI 382
G++VR+
Sbjct: 546 HGLKVRM 552
>emb|CAA49469.1| glutamine amidotransferase [Saccharomyces cerevisiae]
Length = 552
Score = 79.3 bits (194), Expect = 3e-14
Identities = 38/67 (56%), Positives = 49/67 (72%)
Frame = -1
Query: 582 DLIKLISDAVSIPVIASSGAGVPQHFSEVFGTTNASAALAAAIFHRKEVPIQSVKEHLLK 403
+LI+ + DAV IPVIASSGAGVP+HF E F T A A L A +FHR E + VKE+LL+
Sbjct: 483 ELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKEYLLE 542
Query: 402 EGIEVRI 382
G++VR+
Sbjct: 543 HGLKVRM 549
>ref|NP_009807.1| glutamine amidotransferase:cyclase, also called imidazole glycerol
phosphate synthase; His7p [Saccharomyces cerevisiae]
gi|585255|sp|P33734|HIS5_YEAST Imidazole glycerol
phosphate synthase hisHF (IGP synthase) (ImGP synthase)
(IGPS) [Includes: Glutamine amidotransferase ; Cyclase ]
gi|626098|pir||S46125 amidotransferase HIS7 (EC 2.4.2.-)
/ cyclase HIS7 - yeast (Saccharomyces cerevisiae)
gi|536663|emb|CAA85211.1| ORF YBR248c [Saccharomyces
cerevisiae]
Length = 552
Score = 79.3 bits (194), Expect = 3e-14
Identities = 38/67 (56%), Positives = 49/67 (72%)
Frame = -1
Query: 582 DLIKLISDAVSIPVIASSGAGVPQHFSEVFGTTNASAALAAAIFHRKEVPIQSVKEHLLK 403
+LI+ + DAV IPVIASSGAGVP+HF E F T A A L A +FHR E + VKE+LL+
Sbjct: 483 ELIEHVKDAVKIPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHRGEFTVNDVKEYLLE 542
Query: 402 EGIEVRI 382
G++VR+
Sbjct: 543 HGLKVRM 549
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 497,912,447
Number of Sequences: 1393205
Number of extensions: 10724778
Number of successful extensions: 30194
Number of sequences better than 10.0: 164
Number of HSP's better than 10.0 without gapping: 27227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29743
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21712003912
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
