Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014685A_C01 KMC014685A_c01
(825 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177391.1| unknown protein; protein id: At1g72470.1 [Arabi... 57 3e-07
ref|NP_566477.1| Expressed protein; protein id: At3g14090.1, sup... 55 2e-06
dbj|BAB02973.1| gb|AAD25781.1~gene_id:MAG2.5~strong similarity t... 55 2e-06
gb|AAL07238.2| unknown protein [Arabidopsis thaliana] 55 2e-06
ref|NP_175811.1| hypothetical protein; protein id: At1g54090.1, ... 54 2e-06
>ref|NP_177391.1| unknown protein; protein id: At1g72470.1 [Arabidopsis thaliana]
gi|25308572|pir||H96748 unknown protein T10D10.6
[imported] - Arabidopsis thaliana
gi|12325284|gb|AAG52591.1|AC016529_22 unknown protein;
29470-27569 [Arabidopsis thaliana]
Length = 633
Score = 57.4 bits (137), Expect = 3e-07
Identities = 27/35 (77%), Positives = 28/35 (79%)
Frame = -1
Query: 825 HPENYIKYSVEDLEDAVLDFFEGTPVSQHLRRRSE 721
HPENYIK SVEDLE VLD FEG +QHLRRRSE
Sbjct: 599 HPENYIKISVEDLETEVLDLFEGYSATQHLRRRSE 633
>ref|NP_566477.1| Expressed protein; protein id: At3g14090.1, supported by cDNA:
gi_15810240 [Arabidopsis thaliana]
Length = 451
Score = 54.7 bits (130), Expect = 2e-06
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = -1
Query: 825 HPENYIKYSVEDLEDAVLDFFEGTPVSQHLRRR 727
HPENY+KYSVED+E VLDFFEG HLRRR
Sbjct: 419 HPENYLKYSVEDIETIVLDFFEGYTTPPHLRRR 451
>dbj|BAB02973.1| gb|AAD25781.1~gene_id:MAG2.5~strong similarity to unknown protein
[Arabidopsis thaliana]
Length = 623
Score = 54.7 bits (130), Expect = 2e-06
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = -1
Query: 825 HPENYIKYSVEDLEDAVLDFFEGTPVSQHLRRR 727
HPENY+KYSVED+E VLDFFEG HLRRR
Sbjct: 591 HPENYLKYSVEDIETIVLDFFEGYTTPPHLRRR 623
>gb|AAL07238.2| unknown protein [Arabidopsis thaliana]
Length = 503
Score = 54.7 bits (130), Expect = 2e-06
Identities = 24/33 (72%), Positives = 26/33 (78%)
Frame = -1
Query: 825 HPENYIKYSVEDLEDAVLDFFEGTPVSQHLRRR 727
HPENY+KYSVED+E VLDFFEG HLRRR
Sbjct: 471 HPENYLKYSVEDIETIVLDFFEGYTTPPHLRRR 503
>ref|NP_175811.1| hypothetical protein; protein id: At1g54090.1, supported by cDNA:
gi_20260593 [Arabidopsis thaliana]
gi|25308570|pir||F96581 hypothetical protein F15I1.17
[imported] - Arabidopsis thaliana
gi|4587550|gb|AAD25781.1|AC006577_17 EST gb|R64848 comes
from this gene. [Arabidopsis thaliana]
gi|20260594|gb|AAM13195.1| unknown protein [Arabidopsis
thaliana]
Length = 622
Score = 54.3 bits (129), Expect = 2e-06
Identities = 24/32 (75%), Positives = 27/32 (84%)
Frame = -1
Query: 825 HPENYIKYSVEDLEDAVLDFFEGTPVSQHLRR 730
HPENY+KYSVE+LE AVLDFFEG + HLRR
Sbjct: 589 HPENYLKYSVENLETAVLDFFEGYTTAPHLRR 620
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 659,541,964
Number of Sequences: 1393205
Number of extensions: 13888424
Number of successful extensions: 29748
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 28614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29727
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 42857050626
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
