Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014634A_C01 KMC014634A_c01
(543 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197628.1| synaptobrevin-like protein; protein id: At5g223... 135 3e-31
gb|AAM14694.1|AC097446_23 Putative synaptobrevin-like protein [O... 124 7e-28
ref|NP_194942.1| synaptobrevin-like protein; protein id: At4g321... 89 3e-17
ref|NP_180106.1| putative synaptobrevin; protein id: At2g25340.1... 85 6e-16
dbj|BAA95814.1| ESTs AU082579(S2069),D40238(S2069) correspond to... 82 3e-15
>ref|NP_197628.1| synaptobrevin-like protein; protein id: At5g22360.1 [Arabidopsis
thaliana] gi|27805762|sp|Q9FMR5|V714_ARATH
Vesicle-associated membrane protein 714 (AtVAMP714)
gi|9757817|dbj|BAB08335.1| synaptobrevin-like protein
[Arabidopsis thaliana]
Length = 221
Score = 135 bits (340), Expect = 3e-31
Identities = 66/75 (88%), Positives = 70/75 (93%)
Frame = -2
Query: 542 EKILERGDRIELLVDKTATMQDNSFHFRKQSKRLRRALWMKNFKLLALLTCLIVLILYFI 363
EKI+ERGDRIELLVDKTATMQD+SFHFRKQSKRLRRALWMKN KLL LLTCLIV +LY I
Sbjct: 147 EKIMERGDRIELLVDKTATMQDSSFHFRKQSKRLRRALWMKNAKLLVLLTCLIVFLLYII 206
Query: 362 IAACCGGITLPSCRS 318
IA+ CGGITLPSCRS
Sbjct: 207 IASFCGGITLPSCRS 221
>gb|AAM14694.1|AC097446_23 Putative synaptobrevin-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 223
Score = 124 bits (311), Expect = 7e-28
Identities = 59/75 (78%), Positives = 70/75 (92%)
Frame = -2
Query: 542 EKILERGDRIELLVDKTATMQDNSFHFRKQSKRLRRALWMKNFKLLALLTCLIVLILYFI 363
EKIL+RG+RI LLVDKT+TMQD++FHFRKQS+RLRRALWMKN KLLA+LT +IVL+LY I
Sbjct: 149 EKILDRGERISLLVDKTSTMQDSAFHFRKQSRRLRRALWMKNAKLLAVLTAVIVLLLYLI 208
Query: 362 IAACCGGITLPSCRS 318
IAA CGG++LPSCRS
Sbjct: 209 IAAFCGGLSLPSCRS 223
>ref|NP_194942.1| synaptobrevin-like protein; protein id: At4g32150.1, supported by
cDNA: 41543., supported by cDNA: gi_16612291
[Arabidopsis thaliana] gi|27805754|sp|O49377|V711_ARATH
Vesicle-associated membrane protein 711 (AtVAMP711)
(v-SNARE synaptobrevin 7C) (AtVAMP7C)
gi|7488359|pir||T04630 synaptobrevin homolog F10N7.40 -
Arabidopsis thaliana gi|3858935|emb|CAA16574.1|
synaptobrevin-like protein [Arabidopsis thaliana]
gi|4103357|gb|AAD01748.1| vesicle-associated membrane
protein 7C; synaptobrevin 7C [Arabidopsis thaliana]
gi|7270119|emb|CAB79933.1| synaptobrevin-like protein
[Arabidopsis thaliana]
gi|16612292|gb|AAL27509.1|AF439840_1 AT4g32150/F10N7_40
[Arabidopsis thaliana] gi|21593706|gb|AAM65673.1|
synaptobrevin-like protein [Arabidopsis thaliana]
gi|21928069|gb|AAM78063.1| AT4g32150/F10N7_40
[Arabidopsis thaliana]
Length = 219
Score = 89.4 bits (220), Expect = 3e-17
Identities = 40/73 (54%), Positives = 55/73 (74%)
Frame = -2
Query: 542 EKILERGDRIELLVDKTATMQDNSFHFRKQSKRLRRALWMKNFKLLALLTCLIVLILYFI 363
+K+L+RG+R+ELLVDKTA MQ N+F FRKQ++R R +W +N KL LL L+++I+Y
Sbjct: 146 DKVLDRGERLELLVDKTANMQGNTFRFRKQARRFRSNVWWRNCKLTVLLILLLLVIIYIA 205
Query: 362 IAACCGGITLPSC 324
+A C G TLPSC
Sbjct: 206 VAFLCHGPTLPSC 218
>ref|NP_180106.1| putative synaptobrevin; protein id: At2g25340.1 [Arabidopsis
thaliana] gi|27805766|sp|Q9SIQ9|V712_ARATH
Vesicle-associated membrane protein 712 (AtVAMP712)
gi|25412302|pir||C84647 probable synaptobrevin
[imported] - Arabidopsis thaliana
gi|4567243|gb|AAD23657.1| putative synaptobrevin
[Arabidopsis thaliana]
Length = 219
Score = 84.7 bits (208), Expect = 6e-16
Identities = 38/73 (52%), Positives = 53/73 (72%)
Frame = -2
Query: 542 EKILERGDRIELLVDKTATMQDNSFHFRKQSKRLRRALWMKNFKLLALLTCLIVLILYFI 363
+ IL+RG+R+ELLVDKTA MQ N+F FRKQ++R +W +N KL LL ++++I+Y
Sbjct: 146 DNILDRGERLELLVDKTANMQGNTFRFRKQTRRFNNTVWWRNCKLTLLLILVLLVIIYIG 205
Query: 362 IAACCGGITLPSC 324
+A C G TLPSC
Sbjct: 206 VAFACHGPTLPSC 218
>dbj|BAA95814.1| ESTs AU082579(S2069),D40238(S2069) correspond to a region of the
predicted gene.~Similar to Arabidopsis thaliana
vesicle-associated membrane protein 7C; synaptobrevin
7C. (AF025332) [Oryza sativa (japonica cultivar-group)]
Length = 221
Score = 82.4 bits (202), Expect = 3e-15
Identities = 34/73 (46%), Positives = 51/73 (69%)
Frame = -2
Query: 542 EKILERGDRIELLVDKTATMQDNSFHFRKQSKRLRRALWMKNFKLLALLTCLIVLILYFI 363
+K+LERGDR+++LVDKTA MQ N+ F++Q++R R W +N KL L L+ +I+Y +
Sbjct: 147 DKVLERGDRLDMLVDKTANMQGNTIRFKRQARRFRNTTWWRNVKLTIALIFLLTVIIYVV 206
Query: 362 IAACCGGITLPSC 324
+ C G TLP+C
Sbjct: 207 LVFMCHGFTLPTC 219
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 410,412,176
Number of Sequences: 1393205
Number of extensions: 8094319
Number of successful extensions: 19238
Number of sequences better than 10.0: 117
Number of HSP's better than 10.0 without gapping: 18781
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19225
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
