Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014625A_C01 KMC014625A_c01
(608 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_567135.1| transport inhibitor response 1 (TIR1), AtFBL1; ... 73 3e-12
gb|AAK01147.1|AF291816_1 GRR1-like protein 1 [Arabidopsis thaliana] 61 1e-08
ref|NP_567255.1| F-box protein GRR1-like protein 1, AtFBL18; pro... 61 1e-08
gb|AAK76473.1| putative F-box protein GRR1 protein 1, AtFBL18 [A... 61 1e-08
gb|AAG48832.1|AC084218_2 similar to Arabidopsis thaliana transpo... 45 6e-04
>ref|NP_567135.1| transport inhibitor response 1 (TIR1), AtFBL1; protein id:
At3g62980.1, supported by cDNA: gi_11935208, supported
by cDNA: gi_2352493 [Arabidopsis thaliana]
gi|11282337|pir||T48087 transport inhibitor response
protein TIR1 [imported] - Arabidopsis thaliana
gi|2352492|gb|AAB69175.1| transport inhibitor response 1
[Arabidopsis thaliana] gi|2352494|gb|AAB69176.1|
transport inhibitor response 1 [Arabidopsis thaliana]
gi|7573427|emb|CAB87743.1| transport inhibitor response
1 (TIR1) [Arabidopsis thaliana]
gi|25054937|gb|AAN71945.1| putative transport inhibitor
response TIR1, AtFBL1 protein [Arabidopsis thaliana]
Length = 594
Score = 73.2 bits (178), Expect = 3e-12
Identities = 29/42 (69%), Positives = 37/42 (88%)
Frame = -3
Query: 606 DERGPPDTRPESSPVEKLYIYRTISGPRVDMPGYVWTMEDDS 481
DERG PD+RPES PVE+++IYRT++GPR DMPG+VW M+ DS
Sbjct: 539 DERGAPDSRPESCPVERVFIYRTVAGPRFDMPGFVWNMDQDS 580
>gb|AAK01147.1|AF291816_1 GRR1-like protein 1 [Arabidopsis thaliana]
Length = 585
Score = 61.2 bits (147), Expect = 1e-08
Identities = 23/34 (67%), Positives = 32/34 (93%)
Frame = -3
Query: 594 PPDTRPESSPVEKLYIYRTISGPRVDMPGYVWTM 493
PP++RPESSPVE++YIYRT++GPR+D P +VWT+
Sbjct: 538 PPESRPESSPVERIYIYRTVAGPRMDTPEFVWTI 571
>ref|NP_567255.1| F-box protein GRR1-like protein 1, AtFBL18; protein id:
At4g03190.1, supported by cDNA: gi_12658969, supported
by cDNA: gi_15027884 [Arabidopsis thaliana]
gi|25352265|pir||E85040 hypothetical protein AT4g03190
[imported] - Arabidopsis thaliana
gi|4262147|gb|AAD14447.1| putative homolog of transport
inhibitor response 1 [Arabidopsis thaliana]
gi|7270189|emb|CAB77804.1| putative homolog of transport
inhibitor response 1 [Arabidopsis thaliana]
gi|23297438|gb|AAN12969.1| putative F-box protein
AtFBL18 [Arabidopsis thaliana]
Length = 585
Score = 61.2 bits (147), Expect = 1e-08
Identities = 23/34 (67%), Positives = 32/34 (93%)
Frame = -3
Query: 594 PPDTRPESSPVEKLYIYRTISGPRVDMPGYVWTM 493
PP++RPESSPVE++YIYRT++GPR+D P +VWT+
Sbjct: 538 PPESRPESSPVERIYIYRTVAGPRMDTPEFVWTI 571
>gb|AAK76473.1| putative F-box protein GRR1 protein 1, AtFBL18 [Arabidopsis
thaliana]
Length = 585
Score = 61.2 bits (147), Expect = 1e-08
Identities = 23/34 (67%), Positives = 32/34 (93%)
Frame = -3
Query: 594 PPDTRPESSPVEKLYIYRTISGPRVDMPGYVWTM 493
PP++RPESSPVE++YIYRT++GPR+D P +VWT+
Sbjct: 538 PPESRPESSPVERIYIYRTVAGPRMDTPEFVWTI 571
>gb|AAG48832.1|AC084218_2 similar to Arabidopsis thaliana transport inhibitor response 1
(TIR1) (T48087) [Oryza sativa]
Length = 587
Score = 45.4 bits (106), Expect = 6e-04
Identities = 19/31 (61%), Positives = 24/31 (77%)
Frame = -3
Query: 594 PPDTRPESSPVEKLYIYRTISGPRVDMPGYV 502
P D+ P+ +PVEKLY+YRTI+GPR D P V
Sbjct: 554 PLDSLPDETPVEKLYVYRTIAGPRSDTPACV 584
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 537,660,369
Number of Sequences: 1393205
Number of extensions: 11497548
Number of successful extensions: 29598
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 27108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29426
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
