Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014618A_C01 KMC014618A_c01
(723 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_177020.1| very-long-chain fatty acid condensing enzyme (C... 201 7e-51
gb|AAL50069.1| At1g68530/T26J14_10 [Arabidopsis thaliana] gi|203... 201 7e-51
gb|AAM65060.1| very-long-chain fatty acid condensing enzyme CUT1... 201 7e-51
ref|NP_173916.1| fatty acid condensing enzyme CUT1, putative; pr... 194 1e-48
gb|AAO42223.1| putative fatty acid condensing enzyme CUT1 [Arabi... 194 1e-48
>ref|NP_177020.1| very-long-chain fatty acid condensing enzyme (CUT1); protein id:
At1g68530.1, supported by cDNA: 36276. [Arabidopsis
thaliana] gi|25456824|pir||T52308 very-long-chain fatty
acid condensing enzyme CUT1 [validated] - Arabidopsis
thaliana gi|5001734|gb|AAD37122.1|AF129511_1
very-long-chain fatty acid condensing enzyme CUT1
[Arabidopsis thaliana]
gi|12324880|gb|AAG52390.1|AC011915_4 very-long-chain
fatty acid condensing enzyme (CUT1); 56079-54227
[Arabidopsis thaliana]
Length = 497
Score = 201 bits (512), Expect = 7e-51
Identities = 92/103 (89%), Positives = 97/103 (93%)
Frame = -1
Query: 723 GRAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYELNYIESKGRMKRGDRIWQIG 544
GRAVIDELQKNLQLS EHVEASRMTLHRFGNTSSSSLWYEL+YIESKGRM+RGDR+WQI
Sbjct: 395 GRAVIDELQKNLQLSGEHVEASRMTLHRFGNTSSSSLWYELSYIESKGRMRRGDRVWQIA 454
Query: 543 FGSGFKCNSAVWKCNRSIKTPVDGPWEDCIDRYPVHIPEIVNL 415
FGSGFKCNSAVWKCNR+IKTP DGPW DCIDRYPV IPE+V L
Sbjct: 455 FGSGFKCNSAVWKCNRTIKTPKDGPWSDCIDRYPVFIPEVVKL 497
>gb|AAL50069.1| At1g68530/T26J14_10 [Arabidopsis thaliana]
gi|20334738|gb|AAM16230.1| At1g68530/T26J14_10
[Arabidopsis thaliana]
Length = 497
Score = 201 bits (512), Expect = 7e-51
Identities = 92/103 (89%), Positives = 97/103 (93%)
Frame = -1
Query: 723 GRAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYELNYIESKGRMKRGDRIWQIG 544
GRAVIDELQKNLQLS EHVEASRMTLHRFGNTSSSSLWYEL+YIESKGRM+RGDR+WQI
Sbjct: 395 GRAVIDELQKNLQLSGEHVEASRMTLHRFGNTSSSSLWYELSYIESKGRMRRGDRVWQIA 454
Query: 543 FGSGFKCNSAVWKCNRSIKTPVDGPWEDCIDRYPVHIPEIVNL 415
FGSGFKCNSAVWKCNR+IKTP DGPW DCIDRYPV IPE+V L
Sbjct: 455 FGSGFKCNSAVWKCNRTIKTPKDGPWSDCIDRYPVFIPEVVKL 497
>gb|AAM65060.1| very-long-chain fatty acid condensing enzyme CUT1 [Arabidopsis
thaliana]
Length = 492
Score = 201 bits (512), Expect = 7e-51
Identities = 92/103 (89%), Positives = 97/103 (93%)
Frame = -1
Query: 723 GRAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYELNYIESKGRMKRGDRIWQIG 544
GRAVIDELQKNLQLS EHVEASRMTLHRFGNTSSSSLWYEL+YIESKGRM+RGDR+WQI
Sbjct: 390 GRAVIDELQKNLQLSGEHVEASRMTLHRFGNTSSSSLWYELSYIESKGRMRRGDRVWQIA 449
Query: 543 FGSGFKCNSAVWKCNRSIKTPVDGPWEDCIDRYPVHIPEIVNL 415
FGSGFKCNSAVWKCNR+IKTP DGPW DCIDRYPV IPE+V L
Sbjct: 450 FGSGFKCNSAVWKCNRTIKTPKDGPWSDCIDRYPVFIPEVVKL 492
>ref|NP_173916.1| fatty acid condensing enzyme CUT1, putative; protein id:
At1g25450.1, supported by cDNA: 99793. [Arabidopsis
thaliana] gi|25403020|pir||F86384 probable protein fatty
acid condensing enzyme CUT1 [imported] - Arabidopsis
thaliana gi|12321497|gb|AAG50800.1|AC079281_2 fatty acid
condensing enzyme CUT1, putative [Arabidopsis thaliana]
Length = 492
Score = 194 bits (492), Expect = 1e-48
Identities = 88/103 (85%), Positives = 95/103 (91%)
Frame = -1
Query: 723 GRAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYELNYIESKGRMKRGDRIWQIG 544
GRAVIDELQKNLQLS EHVEASRMTLHRFGNTSSSSLWYEL+YIE++GRMKR DR+WQI
Sbjct: 390 GRAVIDELQKNLQLSGEHVEASRMTLHRFGNTSSSSLWYELSYIEAQGRMKRNDRVWQIA 449
Query: 543 FGSGFKCNSAVWKCNRSIKTPVDGPWEDCIDRYPVHIPEIVNL 415
FGSGFKCNSAVWKCNR+IKTP DG W DCI+RYPV IPE+V L
Sbjct: 450 FGSGFKCNSAVWKCNRTIKTPTDGAWSDCIERYPVFIPEVVKL 492
>gb|AAO42223.1| putative fatty acid condensing enzyme CUT1 [Arabidopsis thaliana]
Length = 492
Score = 194 bits (492), Expect = 1e-48
Identities = 88/103 (85%), Positives = 95/103 (91%)
Frame = -1
Query: 723 GRAVIDELQKNLQLSAEHVEASRMTLHRFGNTSSSSLWYELNYIESKGRMKRGDRIWQIG 544
GRAVIDELQKNLQLS EHVEASRMTLHRFGNTSSSSLWYEL+YIE++GRMKR DR+WQI
Sbjct: 390 GRAVIDELQKNLQLSGEHVEASRMTLHRFGNTSSSSLWYELSYIEAQGRMKRNDRVWQIA 449
Query: 543 FGSGFKCNSAVWKCNRSIKTPVDGPWEDCIDRYPVHIPEIVNL 415
FGSGFKCNSAVWKCNR+IKTP DG W DCI+RYPV IPE+V L
Sbjct: 450 FGSGFKCNSAVWKCNRTIKTPTDGAWSDCIERYPVFIPEVVKL 492
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 571,730,572
Number of Sequences: 1393205
Number of extensions: 11976354
Number of successful extensions: 26205
Number of sequences better than 10.0: 264
Number of HSP's better than 10.0 without gapping: 25305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26169
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33780557640
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
