Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014594A_C01 KMC014594A_c01
(601 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P28552|ATPG_PEA ATP synthase gamma chain, chloroplast precurs... 278 5e-74
sp|P29790|ATPG_TOBAC ATP synthase gamma chain, chloroplast precu... 273 2e-72
ref|NP_567265.1| coded for by A. thaliana cDNA AA041141; protein... 267 7e-71
sp|P05435|ATPG_SPIOL ATP synthase gamma chain, chloroplast precu... 227 1e-58
emb|CAA68727.1| ATP synthase [Spinacia oleracea] 221 6e-57
>sp|P28552|ATPG_PEA ATP synthase gamma chain, chloroplast precursor
gi|282923|pir||S27976 H+-transporting two-sector ATPase
(EC 3.6.3.14) gamma chain precursor, chloroplast -
garden pea gi|20654|emb|CAA45150.1| ATP synthase (gamma
subunit) [Pisum sativum]
Length = 376
Score = 278 bits (710), Expect = 5e-74
Identities = 148/180 (82%), Positives = 161/180 (89%), Gaps = 2/180 (1%)
Frame = +3
Query: 63 MSGSNLTMLVSSKPSSLSDASNLSFRSIHLNPFQLPSQNSPPSRISVSP--VQCGLRELR 236
MS SN+TMLVSSKPS L DASNLSFRS NPFQLPSQNS S P +QCGL++L+
Sbjct: 1 MSCSNVTMLVSSKPS-LPDASNLSFRSA-FNPFQLPSQNSSSSCTPSRPTSIQCGLKDLK 58
Query: 237 TRIESVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYSINEQLQTEDVDVP 416
RI+SVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYSINEQLQT+D++ P
Sbjct: 59 NRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYSINEQLQTDDIESP 118
Query: 417 LTKIRPVKKVALVVCTGDRGLCGGFNNFILKKAEARIKELKELGLEYTIISVGKKGNSYF 596
LTK+RPVKKVALVVCTGDRGLCGGFNN ILKKAEARI ELKELGLEYT++SVG+KGNSYF
Sbjct: 119 LTKLRPVKKVALVVCTGDRGLCGGFNNAILKKAEARIAELKELGLEYTVVSVGRKGNSYF 178
>sp|P29790|ATPG_TOBAC ATP synthase gamma chain, chloroplast precursor gi|67880|pir||PWNTG
H+-transporting two-sector ATPase (EC 3.6.3.14) gamma
chain precursor, chloroplast - common tobacco
gi|19785|emb|CAA45152.1| ATP synthase (gamma subunit)
[Nicotiana tabacum]
Length = 377
Score = 273 bits (697), Expect = 2e-72
Identities = 148/184 (80%), Positives = 165/184 (89%), Gaps = 5/184 (2%)
Frame = +3
Query: 63 MSGSNLTMLVSSKPSSLSDASNLSFRSIHLNPFQLPSQN----SPPSRIS-VSPVQCGLR 227
MS SNLTMLVSSKPS LSD+S LSFRS ++PFQLP+ N S PSR S V+PV CGLR
Sbjct: 1 MSCSNLTMLVSSKPS-LSDSSALSFRS-SVSPFQLPNHNTSGPSNPSRSSSVTPVHCGLR 58
Query: 228 ELRTRIESVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYSINEQLQTEDV 407
+LR RIESVKNTQKITEAMKLVAAAKVRRAQEAVV RPFSETLVEVLY+INEQLQT+D+
Sbjct: 59 DLRDRIESVKNTQKITEAMKLVAAAKVRRAQEAVVGARPFSETLVEVLYNINEQLQTDDI 118
Query: 408 DVPLTKIRPVKKVALVVCTGDRGLCGGFNNFILKKAEARIKELKELGLEYTIISVGKKGN 587
DVPLTK+RPVKKVALVV TGDRGLCGGFNN+++KKAEARI++LK LG++YTIISVGKKGN
Sbjct: 119 DVPLTKVRPVKKVALVVVTGDRGLCGGFNNYLIKKAEARIRDLKALGIDYTIISVGKKGN 178
Query: 588 SYFI 599
SYFI
Sbjct: 179 SYFI 182
>ref|NP_567265.1| coded for by A. thaliana cDNA AA041141; protein id: At4g04640.1,
supported by cDNA: 6687., supported by cDNA:
gi_16226523, supported by cDNA: gi_17473928, supported
by cDNA: gi_20148352 [Arabidopsis thaliana]
gi|461550|sp|Q01908|ATP1_ARATH ATP synthase gamma chain
1, chloroplast precursor gi|81635|pir||B39732
H+-transporting two-sector ATPase (EC 3.6.3.14) gamma-1
chain precursor, chloroplast - Arabidopsis thaliana
gi|166632|gb|AAA32753.1| ATP synthase gamma-subunit
gi|5732056|gb|AAD48955.1|AF149414_4 Arabidopsis thaliana
APC1-ATP synthase gamma chain 1 (GB:M61741); contains
similarity to Pfam PF00231 -ATP synthase; score=658.6,
E=3.1e-194n n+1 gi|7267222|emb|CAB80829.1| Arabidopsis
thaliana APC1-ATP synthase gamma chain 1 (GB:M61741),
contains similarity to Pfam PF00231 -ATP synthase,
score=658.6, E=3.1e-194n n+1, coded for by A. thaliana
cDNA T22421, coded for by A. thaliana cDNA W43301, coded
for by A. thaliana cDNA AA041141~Contains ATP synthase
gamma subunit signature AA358-371~contains EST
gb:AA041141, AW004569.1, AW004261.1, W43301, T22421
gi|16226524|gb|AAL16191.1|AF428422_1 AT4g04640/T19J18_4
[Arabidopsis thaliana] gi|17473929|gb|AAL38375.1|
unknown protein [Arabidopsis thaliana]
gi|20148353|gb|AAM10067.1| unknown protein [Arabidopsis
thaliana] gi|21594056|gb|AAM65974.1| ATP synthase
gamma-subunit, putative [Arabidopsis thaliana]
Length = 373
Score = 267 bits (683), Expect = 7e-71
Identities = 146/181 (80%), Positives = 161/181 (88%), Gaps = 2/181 (1%)
Frame = +3
Query: 63 MSGSNLT-MLVSSKPSSLSDASNLSFRSIHLNPFQLPSQNSPPSRIS-VSPVQCGLRELR 236
M+ SNLT M VSSKPS +D+S+LSFRS+ P + +SPPSR S VSP+Q LRELR
Sbjct: 1 MACSNLTTMWVSSKPSLSADSSSLSFRSVLKCP---TNTSSPPSRASSVSPLQASLRELR 57
Query: 237 TRIESVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYSINEQLQTEDVDVP 416
RI+SVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLY+INEQLQT+DVDVP
Sbjct: 58 DRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQTDDVDVP 117
Query: 417 LTKIRPVKKVALVVCTGDRGLCGGFNNFILKKAEARIKELKELGLEYTIISVGKKGNSYF 596
LTK+RPVKKVALVV TGDRGLCGGFNNFI+KKAEARIKELK LGLEYT+ISVGKKGNSYF
Sbjct: 118 LTKVRPVKKVALVVVTGDRGLCGGFNNFIIKKAEARIKELKGLGLEYTVISVGKKGNSYF 177
Query: 597 I 599
+
Sbjct: 178 L 178
>sp|P05435|ATPG_SPIOL ATP synthase gamma chain, chloroplast precursor gi|67879|pir||PWSPG
H+-transporting two-sector ATPase (EC 3.6.3.14) gamma
chain precursor, chloroplast - spinach
gi|21238|emb|CAA35158.1| gamma-subunit of chloroplast
ATP synthase [Spinacia oleracea]
gi|531111|emb|CAA53734.1| gamma subunit of the
chloroplast ATP synthase [Spinacia oleracea]
Length = 364
Score = 227 bits (578), Expect = 1e-58
Identities = 124/169 (73%), Positives = 142/169 (83%), Gaps = 9/169 (5%)
Frame = +3
Query: 120 ASNLSFRSIHLNPFQLP----SQNSPPSRISV----SPVQCG-LRELRTRIESVKNTQKI 272
A +LSF S ++ F LP S +PP+ + +P+QC LRELR RI SVKNTQKI
Sbjct: 2 ACSLSFSS-SVSTFHLPTTTQSTQAPPNNATTLPTTNPIQCANLRELRDRIGSVKNTQKI 60
Query: 273 TEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYSINEQLQTEDVDVPLTKIRPVKKVAL 452
TEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLY++NEQLQTEDVDVPLTKIR VKKVAL
Sbjct: 61 TEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNMNEQLQTEDVDVPLTKIRTVKKVAL 120
Query: 453 VVCTGDRGLCGGFNNFILKKAEARIKELKELGLEYTIISVGKKGNSYFI 599
+V TGDRGLCGGFNN +LKKAE+RI ELK+LG++YTIIS+GKKGN+YFI
Sbjct: 121 MVVTGDRGLCGGFNNMLLKKAESRIAELKKLGVDYTIISIGKKGNTYFI 169
>emb|CAA68727.1| ATP synthase [Spinacia oleracea]
Length = 329
Score = 221 bits (563), Expect = 6e-57
Identities = 113/133 (84%), Positives = 125/133 (93%), Gaps = 1/133 (0%)
Frame = +3
Query: 204 SPVQCG-LRELRTRIESVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYSI 380
+P+QC LRELR RI SVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLY++
Sbjct: 2 NPIQCANLRELRDRIGSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNM 61
Query: 381 NEQLQTEDVDVPLTKIRPVKKVALVVCTGDRGLCGGFNNFILKKAEARIKELKELGLEYT 560
NEQLQTEDVDVPLTKIR VKKVAL+V TGDRGLCGGFNN +LKKAE+RI ELK+LG++YT
Sbjct: 62 NEQLQTEDVDVPLTKIRTVKKVALMVVTGDRGLCGGFNNMLLKKAESRIAELKKLGVDYT 121
Query: 561 IISVGKKGNSYFI 599
IIS+GKKGN+YFI
Sbjct: 122 IISIGKKGNTYFI 134
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 530,838,886
Number of Sequences: 1393205
Number of extensions: 11861433
Number of successful extensions: 48657
Number of sequences better than 10.0: 314
Number of HSP's better than 10.0 without gapping: 44784
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48108
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
