Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014571A_C01 KMC014571A_c01
(546 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB89768.1| P0557A01.6 [Oryza sativa (japonica cultivar-grou... 184 5e-46
gb|AAO17032.1| Hypothetical protein [Oryza sativa (japonica cult... 184 5e-46
ref|NP_566450.1| expressed protein; protein id: At3g13230.1, sup... 176 2e-43
emb|CAA64063.1| YOR3513c [Saccharomyces cerevisiae] 160 9e-39
ref|NP_608387.1| CG11738-PA [Drosophila melanogaster] gi|7295605... 160 9e-39
>dbj|BAB89768.1| P0557A01.6 [Oryza sativa (japonica cultivar-group)]
gi|20161192|dbj|BAB90119.1| P0415A04.33 [Oryza sativa
(japonica cultivar-group)]
Length = 220
Score = 184 bits (468), Expect = 5e-46
Identities = 89/107 (83%), Positives = 105/107 (97%)
Frame = -2
Query: 545 VIDAIALLRLDELYIESFEIKDVKTLRGDHLSRAIGRLSGKGGKTKFAIENASKTRIVIA 366
+ DA+ALLRLD+LY++SFEIKDVKTLRG+HLSRAIGRLSGKGGKTK+AIEN+++TRIVIA
Sbjct: 114 IADAVALLRLDDLYVDSFEIKDVKTLRGEHLSRAIGRLSGKGGKTKYAIENSTRTRIVIA 173
Query: 365 DSKIHILGSFANIKIARDSLCSLIMGSPAGKVYSKLRAVTSRLAERF 225
D+KIHILGSF NIK+ARDSLCSLI+GSPAGKVYSKLRAV++RLAER+
Sbjct: 174 DTKIHILGSFVNIKVARDSLCSLILGSPAGKVYSKLRAVSARLAERY 220
>gb|AAO17032.1| Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 206
Score = 184 bits (468), Expect = 5e-46
Identities = 89/107 (83%), Positives = 105/107 (97%)
Frame = -2
Query: 545 VIDAIALLRLDELYIESFEIKDVKTLRGDHLSRAIGRLSGKGGKTKFAIENASKTRIVIA 366
+ DA+ALLRLD+LY++SFEIKDVKTLRG+HLSRAIGRLSGKGGKTK+AIEN+++TRIVIA
Sbjct: 100 IADAVALLRLDDLYVDSFEIKDVKTLRGEHLSRAIGRLSGKGGKTKYAIENSTRTRIVIA 159
Query: 365 DSKIHILGSFANIKIARDSLCSLIMGSPAGKVYSKLRAVTSRLAERF 225
D+KIHILGSF NIK+ARDSLCSLI+GSPAGKVYSKLRAV++RLAER+
Sbjct: 160 DTKIHILGSFVNIKVARDSLCSLILGSPAGKVYSKLRAVSARLAERY 206
>ref|NP_566450.1| expressed protein; protein id: At3g13230.1, supported by cDNA:
22588. [Arabidopsis thaliana] gi|9294528|dbj|BAB02791.1|
gb|AAF50915.1~gene_id:MDC11.5~similar to unknown protein
[Arabidopsis thaliana]
Length = 215
Score = 176 bits (446), Expect = 2e-43
Identities = 86/103 (83%), Positives = 101/103 (97%)
Frame = -2
Query: 539 DAIALLRLDELYIESFEIKDVKTLRGDHLSRAIGRLSGKGGKTKFAIENASKTRIVIADS 360
DAI+LLR+DELY+ESFEIKDVKTL+G+HLSRAIGRLSGKGGKTKFAIEN++KTRIVIAD+
Sbjct: 113 DAISLLRMDELYVESFEIKDVKTLKGEHLSRAIGRLSGKGGKTKFAIENSTKTRIVIADT 172
Query: 359 KIHILGSFANIKIARDSLCSLIMGSPAGKVYSKLRAVTSRLAE 231
+IHILG+F+NIK+AR SLCSLIMGSPAGKVYSKLR+V++RL E
Sbjct: 173 RIHILGAFSNIKVARSSLCSLIMGSPAGKVYSKLRSVSARLNE 215
>emb|CAA64063.1| YOR3513c [Saccharomyces cerevisiae]
Length = 218
Score = 160 bits (405), Expect = 9e-39
Identities = 78/105 (74%), Positives = 94/105 (89%)
Frame = -2
Query: 539 DAIALLRLDELYIESFEIKDVKTLRGDHLSRAIGRLSGKGGKTKFAIENASKTRIVIADS 360
D+IALLRLD+LYIE+FE+KDVKTL GDHLSRAIGR++GK GKTKFAIENA++TRIV+ADS
Sbjct: 114 DSIALLRLDDLYIETFEVKDVKTLTGDHLSRAIGRIAGKDGKTKFAIENATRTRIVLADS 173
Query: 359 KIHILGSFANIKIARDSLCSLIMGSPAGKVYSKLRAVTSRLAERF 225
KIHILG F +I++AR+S+ SLI+GSP GKVY LR V SRL ER+
Sbjct: 174 KIHILGGFTHIRMARESVVSLILGSPPGKVYGNLRTVASRLKERY 218
>ref|NP_608387.1| CG11738-PA [Drosophila melanogaster] gi|7295605|gb|AAF50915.1|
CG11738-PA [Drosophila melanogaster]
gi|10441476|gb|AAG17061.1|AF188892_1 potential
RNA-binding protein [Drosophila melanogaster]
gi|16769266|gb|AAL28852.1| LD21667p [Drosophila
melanogaster]
Length = 240
Score = 160 bits (405), Expect = 9e-39
Identities = 78/106 (73%), Positives = 95/106 (89%)
Frame = -2
Query: 545 VIDAIALLRLDELYIESFEIKDVKTLRGDHLSRAIGRLSGKGGKTKFAIENASKTRIVIA 366
V DA+ALLRL++L++ESFEIKDVKTLRGDH SRAIGRL+GKGG+TKF IEN +KTRIV+A
Sbjct: 134 VDDALALLRLEDLFVESFEIKDVKTLRGDHQSRAIGRLAGKGGRTKFTIENVTKTRIVLA 193
Query: 365 DSKIHILGSFANIKIARDSLCSLIMGSPAGKVYSKLRAVTSRLAER 228
DSKIHILGS+ NI++AR ++C+LI+GSP KVY LRAV SRL+ER
Sbjct: 194 DSKIHILGSYQNIQLARRAVCNLILGSPPSKVYGNLRAVASRLSER 239
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 431,098,100
Number of Sequences: 1393205
Number of extensions: 8718694
Number of successful extensions: 19466
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 18953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19449
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
