Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014547A_C01 KMC014547A_c01
(370 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB46381.1| T-cell receptor beta chain 31 3.4
ref|NP_702209.1| hypothetical protein [Plasmodium falciparum 3D7... 31 4.4
ref|NP_704502.1| hypothetical protein [Plasmodium falciparum 3D7... 30 7.6
>gb|AAB46381.1| T-cell receptor beta chain
Length = 142
Score = 31.2 bits (69), Expect = 3.4
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +3
Query: 30 MTILLMKSNHESISIAVNISQRGN----SFDRGSRFLVIGQEP*NTVMEEDKAIFS*LKQ 197
+ I+ +K NH +I +I RG+ F G++ VIG+ + ++E D IFS KQ
Sbjct: 65 LDIVSVKKNHSAIYFCASIRDRGSYSNMIFGDGTKLTVIGKN--SEIIEPDVVIFSPSKQ 122
>ref|NP_702209.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23497389|gb|AAN36933.1|AE014821_20 hypothetical
protein [Plasmodium falciparum 3D7]
Length = 1518
Score = 30.8 bits (68), Expect = 4.4
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 6/54 (11%)
Frame = -2
Query: 321 HKFFFTFWKQTQIV**F*F------MV*YTLIVKVNHPCYV*YDVFIFVLAKRK 178
H FFFT K+ I+ + M+ +KV H C++ Y+ FIF+L+K+K
Sbjct: 389 HPFFFTTVKRKDILNNNNYYYNNKSMIKRKYYLKVLHICHIIYEQFIFLLSKKK 442
>ref|NP_704502.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23499241|emb|CAD51321.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 5910
Score = 30.0 bits (66), Expect = 7.6
Identities = 12/31 (38%), Positives = 23/31 (73%)
Frame = +1
Query: 196 KDEHIILHITRMINLNYQSVSNHESKSSDNL 288
+D + + + R+IN++Y +VS HE+K +DN+
Sbjct: 2681 QDAQLSIFLIRLINISY-NVSTHENKKNDNI 2710
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 295,964,334
Number of Sequences: 1393205
Number of extensions: 5371969
Number of successful extensions: 12663
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 12415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12661
length of database: 448,689,247
effective HSP length: 98
effective length of database: 312,155,157
effective search space used: 7491723768
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
