Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014541A_C01 KMC014541A_c01
(526 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC58020.1| angustifolia [Ipomoea nil] gi|28804254|dbj|BAC58... 197 8e-50
dbj|BAB64262.1| C-terminal binding protein [Arabidopsis thaliana] 192 2e-48
ref|NP_563629.1| expressed protein; protein id: At1g01510.1, sup... 192 2e-48
emb|CAA71175.1| putative dehydrogenase [Arabidopsis thaliana] 192 2e-48
emb|CAA73307.1| unnamed protein product [Arabidopsis thaliana] 192 2e-48
>dbj|BAC58020.1| angustifolia [Ipomoea nil] gi|28804254|dbj|BAC58021.1| angustifolia
[Ipomoea nil]
Length = 654
Score = 197 bits (500), Expect = 8e-50
Identities = 87/109 (79%), Positives = 103/109 (93%)
Frame = -3
Query: 524 QRVKGGGWILDSLSNVSKRDPAAQFLIIFRSKDTIGLRSLAAGGKLLQINRRMEFVFASH 345
QRV+GGGW LDS+SN++KRDPAAQFL+++RSKDTIGLRS AGGKLLQINRRMEFVFASH
Sbjct: 546 QRVQGGGWFLDSMSNITKRDPAAQFLVVYRSKDTIGLRSFTAGGKLLQINRRMEFVFASH 605
Query: 344 SFDVWENWTLEGSLQECRLVNCRNPSAVLNVRIEILATVGEDGVTRWIE 198
SFDVWE+WT EGSL+ECRLVNCRNP A+L+VRIE+LA +GEDG+TRW++
Sbjct: 606 SFDVWESWTFEGSLEECRLVNCRNPLAILDVRIEVLAAIGEDGITRWLD 654
>dbj|BAB64262.1| C-terminal binding protein [Arabidopsis thaliana]
Length = 636
Score = 192 bits (488), Expect = 2e-48
Identities = 89/109 (81%), Positives = 101/109 (92%)
Frame = -3
Query: 524 QRVKGGGWILDSLSNVSKRDPAAQFLIIFRSKDTIGLRSLAAGGKLLQINRRMEFVFASH 345
QR K GGW LD+LSNVSKRDPAAQF+I +R+KDT+GLRS AAGGKLLQINRRMEFVFASH
Sbjct: 528 QRTKNGGWFLDTLSNVSKRDPAAQFIIAYRNKDTVGLRSFAAGGKLLQINRRMEFVFASH 587
Query: 344 SFDVWENWTLEGSLQECRLVNCRNPSAVLNVRIEILATVGEDGVTRWIE 198
SFDVWE+W+LEGSL ECRLVNCRN SAVL+VR+EILA VG+DG+TRWI+
Sbjct: 588 SFDVWESWSLEGSLDECRLVNCRNSSAVLDVRVEILAMVGDDGITRWID 636
>ref|NP_563629.1| expressed protein; protein id: At1g01510.1, supported by cDNA:
gi_15408534, supported by cDNA: gi_16648918 [Arabidopsis
thaliana] gi|2505877|emb|CAA73306.1| dehydrogenase
[Arabidopsis thaliana]
Length = 636
Score = 192 bits (488), Expect = 2e-48
Identities = 89/109 (81%), Positives = 101/109 (92%)
Frame = -3
Query: 524 QRVKGGGWILDSLSNVSKRDPAAQFLIIFRSKDTIGLRSLAAGGKLLQINRRMEFVFASH 345
QR K GGW LD+LSNVSKRDPAAQF+I +R+KDT+GLRS AAGGKLLQINRRMEFVFASH
Sbjct: 528 QRTKNGGWFLDTLSNVSKRDPAAQFIIAYRNKDTVGLRSFAAGGKLLQINRRMEFVFASH 587
Query: 344 SFDVWENWTLEGSLQECRLVNCRNPSAVLNVRIEILATVGEDGVTRWIE 198
SFDVWE+W+LEGSL ECRLVNCRN SAVL+VR+EILA VG+DG+TRWI+
Sbjct: 588 SFDVWESWSLEGSLDECRLVNCRNSSAVLDVRVEILAMVGDDGITRWID 636
>emb|CAA71175.1| putative dehydrogenase [Arabidopsis thaliana]
Length = 641
Score = 192 bits (488), Expect = 2e-48
Identities = 89/109 (81%), Positives = 101/109 (92%)
Frame = -3
Query: 524 QRVKGGGWILDSLSNVSKRDPAAQFLIIFRSKDTIGLRSLAAGGKLLQINRRMEFVFASH 345
QR K GGW LD+LSNVSKRDPAAQF+I +R+KDT+GLRS AAGGKLLQINRRMEFVFASH
Sbjct: 533 QRTKNGGWFLDTLSNVSKRDPAAQFIIAYRNKDTVGLRSFAAGGKLLQINRRMEFVFASH 592
Query: 344 SFDVWENWTLEGSLQECRLVNCRNPSAVLNVRIEILATVGEDGVTRWIE 198
SFDVWE+W+LEGSL ECRLVNCRN SAVL+VR+EILA VG+DG+TRWI+
Sbjct: 593 SFDVWESWSLEGSLDECRLVNCRNSSAVLDVRVEILAMVGDDGITRWID 641
>emb|CAA73307.1| unnamed protein product [Arabidopsis thaliana]
Length = 627
Score = 192 bits (488), Expect = 2e-48
Identities = 89/109 (81%), Positives = 101/109 (92%)
Frame = -3
Query: 524 QRVKGGGWILDSLSNVSKRDPAAQFLIIFRSKDTIGLRSLAAGGKLLQINRRMEFVFASH 345
QR K GGW LD+LSNVSKRDPAAQF+I +R+KDT+GLRS AAGGKLLQINRRMEFVFASH
Sbjct: 519 QRTKNGGWFLDTLSNVSKRDPAAQFIIAYRNKDTVGLRSFAAGGKLLQINRRMEFVFASH 578
Query: 344 SFDVWENWTLEGSLQECRLVNCRNPSAVLNVRIEILATVGEDGVTRWIE 198
SFDVWE+W+LEGSL ECRLVNCRN SAVL+VR+EILA VG+DG+TRWI+
Sbjct: 579 SFDVWESWSLEGSLDECRLVNCRNSSAVLDVRVEILAMVGDDGITRWID 627
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,719,470
Number of Sequences: 1393205
Number of extensions: 9324032
Number of successful extensions: 22514
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 21891
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22499
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
