Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014522A_C01 KMC014522A_c01
(501 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO49697.1| similar to Arabidopsis thaliana (Mouse-ear cress)... 35 0.62
ref|NP_175132.1| hypothetical protein; protein id: At1g45180.1 [... 34 0.81
ref|NP_683397.1| similar to putative RING zinc finger protein; p... 34 0.81
ref|XP_114481.3| similar to hypothetical protein [Macaca fascicu... 33 1.4
gb|AAH43435.1| Unknown (protein for IMAGE:5296336) [Homo sapiens] 33 1.4
>gb|AAO49697.1| similar to Arabidopsis thaliana (Mouse-ear cress). DNA repair
protein RAD5 protein [Dictyostelium discoideum]
Length = 604
Score = 34.7 bits (78), Expect = 0.62
Identities = 20/70 (28%), Positives = 35/70 (49%), Gaps = 1/70 (1%)
Frame = -1
Query: 501 TSLFGNPHAPLMTNSSAESSDPRQYNSNHVHTLSSGSSLMPHPFM-PSLHPFSNSPLSRR 325
T+L + ++ + S S+ +Y +NH++ S+ S P P P P S P+S R
Sbjct: 245 TNLLSSSGGAMLISPSRSQSESPRYKTNHLNQSSNCVSNTPTPLQSPHSTPHSTPPMSPR 304
Query: 324 LPTPFSSKLL 295
+ P S+ L+
Sbjct: 305 IIKPSSTNLV 314
>ref|NP_175132.1| hypothetical protein; protein id: At1g45180.1 [Arabidopsis
thaliana] gi|7767667|gb|AAF69164.1|AC007915_16 F27F5.26
[Arabidopsis thaliana]
Length = 645
Score = 34.3 bits (77), Expect = 0.81
Identities = 22/65 (33%), Positives = 31/65 (46%), Gaps = 2/65 (3%)
Frame = -1
Query: 477 APLMTNSSAESSDPRQYNSNHVHTLSSGSSLMPHPFMPSLHPFSNSPL--SRRLPTPFSS 304
AP + N + + HV + SS +S+ P P P+L P+ N+ L RRL F
Sbjct: 363 APELRNVAHGHISRNASGARHVASSSSRTSVQPSPSSPALTPYQNNSLHNQRRLSENFRR 422
Query: 303 KLLDS 289
LL S
Sbjct: 423 SLLSS 427
>ref|NP_683397.1| similar to putative RING zinc finger protein; protein id:
At1g45228.1 [Arabidopsis thaliana]
Length = 779
Score = 34.3 bits (77), Expect = 0.81
Identities = 22/65 (33%), Positives = 31/65 (46%), Gaps = 2/65 (3%)
Frame = -1
Query: 477 APLMTNSSAESSDPRQYNSNHVHTLSSGSSLMPHPFMPSLHPFSNSPL--SRRLPTPFSS 304
AP + N + + HV + SS +S+ P P P+L P+ N+ L RRL F
Sbjct: 497 APELRNVAHGHISRNASGARHVASSSSRTSVQPSPSSPALTPYQNNSLHNQRRLSENFRR 556
Query: 303 KLLDS 289
LL S
Sbjct: 557 SLLSS 561
>ref|XP_114481.3| similar to hypothetical protein [Macaca fascicularis] [Homo
sapiens]
Length = 263
Score = 33.5 bits (75), Expect = 1.4
Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = -1
Query: 501 TSLFGNPHAPLMTNSSAESSDPRQYNSNHVHTLSSGSSLMP----HPFMPSLHPFSNSPL 334
TS +P APL +S SS P+ V +L S SSL P P HP P
Sbjct: 144 TSFHVSPRAPLAPLASMPSSVPK----TSVESLGSPSSLSSSKPREPLCPLKHPSHQPPA 199
Query: 333 SRRLPTPFSS 304
S P P SS
Sbjct: 200 STLSPNPTSS 209
>gb|AAH43435.1| Unknown (protein for IMAGE:5296336) [Homo sapiens]
Length = 350
Score = 33.5 bits (75), Expect = 1.4
Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = -1
Query: 501 TSLFGNPHAPLMTNSSAESSDPRQYNSNHVHTLSSGSSLMP----HPFMPSLHPFSNSPL 334
TS +P APL +S SS P+ V +L S SSL P P HP P
Sbjct: 155 TSFHVSPRAPLAPLASMPSSVPK----TSVESLGSPSSLSSSKPREPLCPLKHPSHQPPA 210
Query: 333 SRRLPTPFSS 304
S P P SS
Sbjct: 211 STLSPNPTSS 220
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 401,799,687
Number of Sequences: 1393205
Number of extensions: 7818215
Number of successful extensions: 17429
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17417
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15072921604
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
