Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014512A_C01 KMC014512A_c01
(513 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAO25542.1| GAMYB-binding protein [Hordeum vulgare subsp. vul... 52 4e-06
ref|NP_565151.1| expressed protein; protein id: At1g77180.1, sup... 45 5e-04
ref|ZP_00063161.1| hypothetical protein [Leuconostoc mesenteroid... 34 0.87
gb|EAA22527.1| Homo sapiens KIAA1897 protein [Plasmodium yoelii ... 33 1.5
ref|NP_680467.1| similar to copia-like retroelement pol polyprot... 33 1.9
>gb|AAO25542.1| GAMYB-binding protein [Hordeum vulgare subsp. vulgare]
Length = 515
Score = 52.0 bits (123), Expect = 4e-06
Identities = 27/37 (72%), Positives = 31/37 (82%), Gaps = 1/37 (2%)
Frame = -2
Query: 512 MEKVGGGGTMKASAGSSMRDGYE-GGSSRTRIGFERG 405
++K+GGGGTMKAS GSS RD YE GGS R+RI FERG
Sbjct: 478 VDKIGGGGTMKASGGSS-RDDYEGGGSGRSRINFERG 513
>ref|NP_565151.1| expressed protein; protein id: At1g77180.1, supported by cDNA:
gi_14423425, supported by cDNA: gi_16604361, supported
by cDNA: gi_20148382 [Arabidopsis thaliana]
gi|7487002|pir||T00448 hypothetical protein T14N5.5 -
Arabidopsis thaliana gi|3540201|gb|AAC34351.1| Putative
nuclear protein [Arabidopsis thaliana]
gi|14423426|gb|AAK62395.1|AF386950_1 Putative nuclear
protein [Arabidopsis thaliana]
gi|16604362|gb|AAL24187.1| At1g77180/T14N5_5
[Arabidopsis thaliana] gi|20148383|gb|AAM10082.1|
putative nuclear protein [Arabidopsis thaliana]
Length = 613
Score = 45.1 bits (105), Expect = 5e-04
Identities = 22/37 (59%), Positives = 27/37 (72%), Gaps = 2/37 (5%)
Frame = -2
Query: 512 MEKVGGGGTMKASAG--SSMRDGYEGGSSRTRIGFER 408
++K+G GGTM+AS G SS RD GGS RT+I FER
Sbjct: 573 LDKIGSGGTMRASGGGGSSSRDDDHGGSGRTKINFER 609
>ref|ZP_00063161.1| hypothetical protein [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
Length = 501
Score = 34.3 bits (77), Expect = 0.87
Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Frame = +3
Query: 111 NYSFKVQIEKIYFELQITQYNLLKDKLSPTP-----RNRIQEQFISPPKRRAPGEEGGSG 275
N S+ V+ E Y +LQIT NL K + P +N+ Q+Q P + A EG G
Sbjct: 134 NLSYPVETE--YGQLQIT-INLSKPEKDPKVIAAALKNKTQQQEQYPASQLAKENEGYWG 190
Query: 276 QNVSATTTSSQLFVSRHTNLSHHCEYSVLSMRNMHHLILSSSMSP 410
+ A ++ ++ N + + +YS + N H ++LS ++ P
Sbjct: 191 RLDYAARSNHRVIPVTLGNENWYFQYSPYAYFNEHAIVLSENIRP 235
>gb|EAA22527.1| Homo sapiens KIAA1897 protein [Plasmodium yoelii yoelii]
Length = 717
Score = 33.5 bits (75), Expect = 1.5
Identities = 19/53 (35%), Positives = 27/53 (50%)
Frame = +1
Query: 151 NYK*LNITY*KINCHQHPEIEYKNSLFHHLKDELQGKRVGVAKT*VLQPHHPN 309
N K L+I Y K C++ E++Y N LF + K VGV K + + H N
Sbjct: 99 NKKILDIEYIKKFCYEENEVKYSNGLFEPKIGDASNKFVGVNKYNLKEEPHEN 151
>ref|NP_680467.1| similar to copia-like retroelement pol polyprotein; protein id:
At5g65683.1 [Arabidopsis thaliana]
Length = 717
Score = 33.1 bits (74), Expect = 1.9
Identities = 25/83 (30%), Positives = 36/83 (43%)
Frame = +3
Query: 195 PTPRNRIQEQFISPPKRRAPGEEGGSGQNVSATTTSSQLFVSRHTNLSHHCEYSVLSMRN 374
PTPR R + F+S P GGSG ++ ++S S T+ HC + N
Sbjct: 34 PTPRFRSKFGFLSNPSTPRLRSRGGSGTGCRSSASTSVTIPSLPTSPKLHCR----TTSN 89
Query: 375 MHHLILSSSMSPFKSNASPTRTS 443
+SS F SN S ++S
Sbjct: 90 ATPRTSNSSSPKFFSNPSSPKSS 112
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 447,376,993
Number of Sequences: 1393205
Number of extensions: 9365500
Number of successful extensions: 28190
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 26039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28054
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
