Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014504A_C02 KMC014504A_c02
(645 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_179754.1| AtRer1B; protein id: At2g21600.1, supported by ... 123 2e-27
pir||T51628 endoplasmatic reticulum retrieval protein Rer1B [val... 123 2e-27
ref|NP_195633.1| AtRer1A; protein id: At4g39220.1, supported by ... 122 4e-27
ref|NP_565550.1| putative integral membrane protein; protein id:... 108 5e-23
dbj|BAB16908.1| putative Rer1A protein (AtRer1A) [Oryza sativa (... 107 1e-22
>ref|NP_179754.1| AtRer1B; protein id: At2g21600.1, supported by cDNA: 92908.,
supported by cDNA: gi_16323080, supported by cDNA:
gi_4160668 [Arabidopsis thaliana]
gi|21431803|sp|O48671|RERB_ARATH RER1B protein (AtRER1B)
gi|25348191|pir||B84603 AtRer1B [imported] - Arabidopsis
thaliana gi|4567230|gb|AAD23645.1| AtRer1B [Arabidopsis
thaliana] gi|16323081|gb|AAL15275.1| At2g21600/F2G1.13
[Arabidopsis thaliana] gi|21360413|gb|AAM47322.1|
At2g21600/F2G1.13 [Arabidopsis thaliana]
Length = 195
Score = 123 bits (308), Expect = 2e-27
Identities = 54/71 (76%), Positives = 63/71 (88%)
Frame = -2
Query: 644 YSITKAFCIAFVMTFFSAFDVPVFWPILLFYWVTLFTLTMRRQIAHMIRYKYVPFSFGKM 465
YS+TKAFCIAF+MTFFS FDVPVFWPILL YWV LF LTMRRQIAHMI++KY+PFS GK
Sbjct: 118 YSMTKAFCIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQ 177
Query: 464 RYDGKRASAES 432
+Y G+++SA S
Sbjct: 178 KYSGRKSSANS 188
>pir||T51628 endoplasmatic reticulum retrieval protein Rer1B [validated] -
Arabidopsis thaliana gi|2865177|dbj|BAA24804.1| AtRer1B
[Arabidopsis thaliana] gi|21617987|gb|AAM67037.1|
AtRer1B [Arabidopsis thaliana]
Length = 195
Score = 123 bits (308), Expect = 2e-27
Identities = 54/71 (76%), Positives = 63/71 (88%)
Frame = -2
Query: 644 YSITKAFCIAFVMTFFSAFDVPVFWPILLFYWVTLFTLTMRRQIAHMIRYKYVPFSFGKM 465
YS+TKAFCIAF+MTFFS FDVPVFWPILL YWV LF LTMRRQIAHMI++KY+PFS GK
Sbjct: 118 YSMTKAFCIAFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSIGKQ 177
Query: 464 RYDGKRASAES 432
+Y G+++SA S
Sbjct: 178 KYSGRKSSANS 188
>ref|NP_195633.1| AtRer1A; protein id: At4g39220.1, supported by cDNA: 21466.,
supported by cDNA: gi_14994254, supported by cDNA:
gi_4160667 [Arabidopsis thaliana]
gi|6225938|sp|O48670|RERA_ARATH RER1A protein (AtRER1A)
gi|7488293|pir||T08570 endoplasmatic reticulum retrieval
protein Rer1A [validated] - Arabidopsis thaliana
gi|2865175|dbj|BAA24803.1| AtRer1A [Arabidopsis
thaliana] gi|4914434|emb|CAB43637.1| AtRer1A
[Arabidopsis thaliana] gi|7270905|emb|CAB80585.1|
AtRer1A [Arabidopsis thaliana]
gi|14994255|gb|AAK73262.1| AtRer1A [Arabidopsis
thaliana] gi|21554242|gb|AAM63317.1| AtRer1A
[Arabidopsis thaliana] gi|24030322|gb|AAN41329.1|
putative AtRer1A protein [Arabidopsis thaliana]
Length = 191
Score = 122 bits (306), Expect = 4e-27
Identities = 53/68 (77%), Positives = 61/68 (88%)
Frame = -2
Query: 644 YSITKAFCIAFVMTFFSAFDVPVFWPILLFYWVTLFTLTMRRQIAHMIRYKYVPFSFGKM 465
YS+TKAFCIAF+MTFFS FDVPVFWPILL YW+ LF LTMRRQIAHMI+YKY+PFSFGK
Sbjct: 119 YSMTKAFCIAFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFSFGKQ 178
Query: 464 RYDGKRAS 441
+Y G+ +S
Sbjct: 179 KYGGRSSS 186
>ref|NP_565550.1| putative integral membrane protein; protein id: At2g23310.1,
supported by cDNA: 25204., supported by cDNA:
gi_17978977, supported by cDNA: gi_20453334, supported
by cDNA: gi_4163829 [Arabidopsis thaliana]
gi|6226764|sp|Q9ZWI7|RERC_ARATH RER1C protein (AtRER1C)
gi|11281670|pir||T51629 endoplasmatic reticulum
retrieval protein RER1C [validated] - Arabidopsis
thaliana gi|3769300|dbj|BAA33862.1| AtRER1C [Arabidopsis
thaliana] gi|17978978|gb|AAL47450.1| At2g23310/T20D16.6
[Arabidopsis thaliana] gi|20196927|gb|AAB87102.2|
putative integral membrane protein [Arabidopsis
thaliana] gi|20453335|gb|AAM19906.1| At2g23310/T20D16.6
[Arabidopsis thaliana] gi|21554351|gb|AAM63458.1|
putative integral membrane protein [Arabidopsis
thaliana]
Length = 212
Score = 108 bits (271), Expect = 5e-23
Identities = 50/71 (70%), Positives = 57/71 (79%)
Frame = -2
Query: 641 SITKAFCIAFVMTFFSAFDVPVFWPILLFYWVTLFTLTMRRQIAHMIRYKYVPFSFGKMR 462
SI +AF I F+MTFF FDVPVFWPILLFYWV LF LTMR+QI HMI+Y+YVPFSFGK +
Sbjct: 141 SIIRAFIIGFMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFSFGKKQ 200
Query: 461 YDGKRASAEST 429
Y K A ES+
Sbjct: 201 YGKKPAPTESS 211
>dbj|BAB16908.1| putative Rer1A protein (AtRer1A) [Oryza sativa (japonica
cultivar-group)]
Length = 522
Score = 107 bits (268), Expect = 1e-22
Identities = 49/61 (80%), Positives = 53/61 (86%)
Frame = -2
Query: 644 YSITKAFCIAFVMTFFSAFDVPVFWPILLFYWVTLFTLTMRRQIAHMIRYKYVPFSFGKM 465
Y+ITKAF IAFVMTFFS FDVPVFWPILL YWV LF LTM+RQI HMI+YKYVPFS GK
Sbjct: 348 YAITKAFLIAFVMTFFSVFDVPVFWPILLCYWVVLFVLTMKRQIVHMIKYKYVPFSVGKQ 407
Query: 464 R 462
+
Sbjct: 408 Q 408
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 517,149,506
Number of Sequences: 1393205
Number of extensions: 10475203
Number of successful extensions: 26078
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 25272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26069
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
