Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014496A_C01 KMC014496A_c01
(785 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_568027.1| arabinogalactan-protein (AGP18); protein id: At... 161 9e-39
dbj|BAA81686.1| expressed in cucumber hypocotyls [Cucumis sativus] 161 9e-39
gb|AAG24616.1|AF298594_1 arabinogalactan protein [Nicotiana alata] 155 8e-37
pir||T04739 hypothetical protein F6G17.100 - Arabidopsis thalian... 151 1e-35
ref|NP_179095.1| arabinogalactan-protein (AGP9); protein id: At2... 147 2e-34
>ref|NP_568027.1| arabinogalactan-protein (AGP18); protein id: At4g37450.1, supported
by cDNA: gi_11935087, supported by cDNA: gi_15724155
[Arabidopsis thaliana]
gi|11935088|gb|AAG41964.1|AF305940_1 arabinogalactan
protein AGP18 [Arabidopsis thaliana]
Length = 209
Score = 161 bits (408), Expect = 9e-39
Identities = 108/218 (49%), Positives = 133/218 (60%), Gaps = 18/218 (8%)
Frame = -1
Query: 752 MDRNGVFSLALICIVVAGVGGQSPTAAPTTSPATPSATTPVSTPVAPVASPKPA-ATTPA 576
MDRN + ++ LICIVVAGVGGQSP ++PT SP TPSA T T V SP A A TP
Sbjct: 1 MDRNFLLTVTLICIVVAGVGGQSPISSPTKSPTTPSAPTTSPTKSPAVTSPTTAPAKTPT 60
Query: 575 ASPSTATAPAPATTTPVTPVTSPPPAAVPVASPPPAAVPVSSPPAKSPPAPAPTA----V 408
AS S + +P + PV+ +SPPP VP +SPP A P+ S P SPP PAP A
Sbjct: 61 ASAS-SPVESPKSPAPVSE-SSPPPTPVPESSPPVPA-PMVSSPVSSPPVPAPVADSPPA 117
Query: 407 PVAAPVTTPEVPAPAPSKTKK--------DAAPAPSPVV--PDSPPAGAPGP-SDAVSPG 261
PVAAPV +VPAPAPSK KK AAPAP+P + P +PP +PGP SDA SPG
Sbjct: 118 PVAAPVA--DVPAPAPSKHKKTTKKSKKHQAAPAPAPELLGPPAPPTESPGPNSDAFSPG 175
Query: 260 PDGAGTANNKSGAETMRSLK--IMEGLAINWVVLVFMF 153
P +A+++SGA + R L+ + +A W VLV F
Sbjct: 176 P----SADDQSGAASTRVLRNVAVGAVATAWAVLVMAF 209
>dbj|BAA81686.1| expressed in cucumber hypocotyls [Cucumis sativus]
Length = 243
Score = 161 bits (408), Expect = 9e-39
Identities = 108/242 (44%), Positives = 133/242 (54%), Gaps = 46/242 (19%)
Frame = -1
Query: 752 MDRNGVFSLALICIVVAGVGGQSPTAAPTTSPAT---------PSATTPVSTPVAPV--- 609
M R V +L LIC VVAGVGGQSP AAPTT+PA P A +PVSTP P
Sbjct: 1 MGRQSVIALVLICAVVAGVGGQSPAAAPTTTPAATPPVAATYPPPAASPVSTPTNPSPAA 60
Query: 608 -----ASPKPAATTPA-ASPSTATAPAPATTTPVT---PVTSPPPAAVPVASPPPAAVPV 456
A+P P +T PA A P+ A +P +TP T P +SPP A+VP +SPP A VP
Sbjct: 61 APQKPATPAPVSTPPASAPPAVAPVASPPASTPPTASVPASSPPAASVPPSSPPAATVPA 120
Query: 455 SSP-------------PAKSPPAPAPTAVPVA------APVTTP--EVPAPAPS--KTKK 345
SSP P SPP P PT P A APV +P EVPAPAPS K+KK
Sbjct: 121 SSPPVPVPVSSPPVSVPVSSPPVPTPTESPPAPESSPPAPVASPPVEVPAPAPSKKKSKK 180
Query: 344 DAAPAPSPVV--PDSPPAGAPGPSDAVSPGPDGAGTANNKSGAETMRSLKIMEGLAINWV 171
APAPSP + P +PP+ AP S+ GP + + +KSGAE + +K+ LA+ W
Sbjct: 181 HRAPAPSPALLGPPAPPSEAPAGSE---EGPAPSPSLEDKSGAEAL--MKVAGSLALGWA 235
Query: 170 VL 165
+
Sbjct: 236 AV 237
>gb|AAG24616.1|AF298594_1 arabinogalactan protein [Nicotiana alata]
Length = 228
Score = 155 bits (391), Expect = 8e-37
Identities = 103/234 (44%), Positives = 134/234 (57%), Gaps = 35/234 (14%)
Frame = -1
Query: 752 MDRNGVFSLALICIVVAGVGGQSPTAAPTTSPATPSATTPVSTPVAPVASPKPAATTPAA 573
MDR VF ++ +CIVVA V GQ+P AAP +P ATTP + +P PA T PA+
Sbjct: 1 MDRKIVFLVSFLCIVVASVTGQTPAAAPAKAPVGAKATTPPAAAPTKPKTPAPA-TAPAS 59
Query: 572 SPSTAT------APAPATTTPV--TPVTSPP--------PAAVPVASPPPAAVPVSSPPA 441
+P TA APA A TTPV +PV++PP PAAVPV+SPP A PV SPPA
Sbjct: 60 APPTAVSTPPAAAPATAPTTPVVTSPVSAPPAKTPASSPPAAVPVSSPPLAVTPVQSPPA 119
Query: 440 KSPPAPAPTA-------VPVAAPVTTPEVPAPAPSKT---------KKDAAPAPSP--VV 315
+P A P A VPV+AP + VPAPAPSK+ K ++PAPSP +
Sbjct: 120 PAPVAATPPAASAPPAPVPVSAPAVSETVPAPAPSKSKGKGKKKGKKHASSPAPSPDMMS 179
Query: 314 PDSPPAGAPGPS-DAVSPGPDGAGTANNKSGAETMRSLKIMEGLAINWVVLVFM 156
P +PP APGPS ++ SP P + N++SGAE LK++ L W V+ ++
Sbjct: 180 PPAPPTEAPGPSMESDSPSP----SLNDESGAE---KLKMLGSLVAGWAVMSWL 226
>pir||T04739 hypothetical protein F6G17.100 - Arabidopsis thaliana
gi|4468811|emb|CAB38212.1| putative protein [Arabidopsis
thaliana] gi|7270727|emb|CAB80410.1| putative protein
[Arabidopsis thaliana]
Length = 252
Score = 151 bits (381), Expect = 1e-35
Identities = 96/182 (52%), Positives = 114/182 (61%), Gaps = 16/182 (8%)
Frame = -1
Query: 755 VMDRNGVFSLALICIVVAGVGGQSPTAAPTTSPATPSATTPVSTPVAPVASPKPA-ATTP 579
+MDRN + ++ LICIVVAGVGGQSP ++PT SP TPSA T T V SP A A TP
Sbjct: 69 IMDRNFLLTVTLICIVVAGVGGQSPISSPTKSPTTPSAPTTSPTKSPAVTSPTTAPAKTP 128
Query: 578 AASPSTATAPAPATTTPVTPVTSPPPAAVPVASPPPAAVPVSSPPAKSPPAPAPTA---- 411
AS S + +P + PV+ +SPPP VP +SPP A P+ S P SPP PAP A
Sbjct: 129 TASAS-SPVESPKSPAPVSE-SSPPPTPVPESSPPVPA-PMVSSPVSSPPVPAPVADSPP 185
Query: 410 VPVAAPVTTPEVPAPAPSKTKK--------DAAPAPSPVV--PDSPPAGAPGP-SDAVSP 264
PVAAPV +VPAPAPSK KK AAPAP+P + P +PP +PGP SDA SP
Sbjct: 186 APVAAPVA--DVPAPAPSKHKKTTKKSKKHQAAPAPAPELLGPPAPPTESPGPNSDAFSP 243
Query: 263 GP 258
GP
Sbjct: 244 GP 245
>ref|NP_179095.1| arabinogalactan-protein (AGP9); protein id: At2g14890.1, supported
by cDNA: gi_10880494, supported by cDNA: gi_11908041,
supported by cDNA: gi_12642859, supported by cDNA:
gi_13265425, supported by cDNA: gi_19310459 [Arabidopsis
thaliana] gi|25296190|pir||F84522 probable proline-rich
protein [imported] - Arabidopsis thaliana
gi|3650031|gb|AAC61286.1| putative proline-rich protein
[Arabidopsis thaliana]
gi|10880495|gb|AAG24277.1|AF195890_1 arabinogalactan
protein [Arabidopsis thaliana]
gi|11908042|gb|AAG41450.1|AF326868_1 putative
proline-rich protein [Arabidopsis thaliana]
gi|12642860|gb|AAK00372.1|AF339690_1 putative
proline-rich protein [Arabidopsis thaliana]
gi|19310460|gb|AAL84965.1| At2g14890/T26I20.5
[Arabidopsis thaliana] gi|21928071|gb|AAM78064.1|
At2g14890/T26I20.5 [Arabidopsis thaliana]
Length = 191
Score = 147 bits (370), Expect = 2e-34
Identities = 89/197 (45%), Positives = 120/197 (60%), Gaps = 7/197 (3%)
Frame = -1
Query: 734 FSLALICIV-VAGVGGQSPTAAPTTSPATPSATT--PVSTPVAPVASPKPAATTPAASPS 564
F++A+ICIV +AGV GQ+PT+ PT +PA P+ TT P +TP PV++P P T+P P
Sbjct: 5 FAIAVICIVLIAGVTGQAPTSPPTATPAPPTPTTPPPAATP-PPVSAPPPVTTSP---PP 60
Query: 563 TATAPAPATTTPVTPVTSPPPAAVPVASPPPAAVPVSSPPAKSPP--APAPTAVPVAAPV 390
TAP PA P PV+SPPPA+ P A+PPP A P PP SPP P P A P AP+
Sbjct: 61 VTTAPPPANPPP--PVSSPPPASPPPATPPPVASP--PPPVASPPPATPPPVATPPPAPL 116
Query: 389 TTPEVPAPAPSKTKKDAAPAPSP-VVPDSPPAGAPGPS-DAVSPGPDGAGTANNKSGAET 216
+P PAP+ T K +P+PSP P P + APGPS D++SP P N+++GA
Sbjct: 117 ASPPAQVPAPAPTTKPDSPSPSPSSSPPLPSSDAPGPSTDSISPAPSPT-DVNDQNGASK 175
Query: 215 MRSLKIMEGLAINWVVL 165
M S ++ G + W ++
Sbjct: 176 MVS-SLVFGSVLVWFMI 191
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 805,683,408
Number of Sequences: 1393205
Number of extensions: 24795347
Number of successful extensions: 820099
Number of sequences better than 10.0: 24655
Number of HSP's better than 10.0 without gapping: 162456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 416676
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 39215601880
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
