Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014495A_C01 KMC014495A_c01
(529 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196433.1| serine/threonine protein kinase; protein id: At... 133 1e-30
gb|AAM65833.1| serine/threonine protein kinase [Arabidopsis thal... 133 1e-30
ref|NP_593555.1| serine/threonine protein kinase [Schizosaccharo... 38 0.064
ref|NP_069161.1| dTDP-glucose 4,6-dehydratase (rfbB) [Archaeoglo... 35 0.54
ref|ZP_00047386.1| hypothetical protein [Lactobacillus gasseri] 34 0.93
>ref|NP_196433.1| serine/threonine protein kinase; protein id: At5g08160.1, supported
by cDNA: 5323., supported by cDNA: gi_13358242,
supported by cDNA: gi_2109292 [Arabidopsis thaliana]
gi|11278922|pir||T50501 serine/threonine protein kinase
- Arabidopsis thaliana gi|2109293|gb|AAB69123.1|
serine/threonine protein kinase [Arabidopsis thaliana]
gi|8346553|emb|CAB93717.1| serine/threonine protein
kinase [Arabidopsis thaliana]
gi|11762274|gb|AAG40409.1|AF325057_1 AT5g08160
[Arabidopsis thaliana] gi|24417498|gb|AAN60359.1|
unknown [Arabidopsis thaliana]
Length = 347
Score = 133 bits (334), Expect = 1e-30
Identities = 66/74 (89%), Positives = 68/74 (91%), Gaps = 1/74 (1%)
Frame = -3
Query: 527 MYGVSPFEYALAESGGSLQLAIVNAQIKWP-AGPKPSYPEALRQFVSWMLQPQAFMRPRI 351
MYGVSPFEYAL ESGGSLQLAIVNAQIKWP GPK SYPEAL QFV+WMLQPQA +RPRI
Sbjct: 272 MYGVSPFEYALGESGGSLQLAIVNAQIKWPNTGPKASYPEALHQFVTWMLQPQAAVRPRI 331
Query: 350 DDIIIHVDKLIAKF 309
DDIIIHVDKLIAKF
Sbjct: 332 DDIIIHVDKLIAKF 345
>gb|AAM65833.1| serine/threonine protein kinase [Arabidopsis thaliana]
Length = 347
Score = 133 bits (334), Expect = 1e-30
Identities = 66/74 (89%), Positives = 68/74 (91%), Gaps = 1/74 (1%)
Frame = -3
Query: 527 MYGVSPFEYALAESGGSLQLAIVNAQIKWP-AGPKPSYPEALRQFVSWMLQPQAFMRPRI 351
MYGVSPFEYAL ESGGSLQLAIVNAQIKWP GPK SYPEAL QFV+WMLQPQA +RPRI
Sbjct: 272 MYGVSPFEYALGESGGSLQLAIVNAQIKWPNTGPKASYPEALHQFVTWMLQPQAAVRPRI 331
Query: 350 DDIIIHVDKLIAKF 309
DDIIIHVDKLIAKF
Sbjct: 332 DDIIIHVDKLIAKF 345
>ref|NP_593555.1| serine/threonine protein kinase [Schizosaccharomyces pombe]
gi|19924242|sp|Q10078|KAND_SCHPO Putative
serine/threonine-protein kinase C3H1.13
gi|7493390|pir||T38745 serine/threonine protein kinase -
fission yeast (Schizosaccharomyces pombe)
gi|4490638|emb|CAA92266.2| serine/threonine protein
kinase [Schizosaccharomyces pombe]
Length = 344
Score = 38.1 bits (87), Expect = 0.064
Identities = 24/67 (35%), Positives = 36/67 (52%)
Frame = -3
Query: 527 MYGVSPFEYALAESGGSLQLAIVNAQIKWPAGPKPSYPEALRQFVSWMLQPQAFMRPRID 348
M+ SPFE +++ GGSL LA+ NAQ +P K Y L + V LQ + RP
Sbjct: 276 MFHASPFEREVSQ-GGSLALAVCNAQYSFPR--KHPYSTLLCEIVEACLQREPNKRPSAR 332
Query: 347 DIIIHVD 327
+++ +D
Sbjct: 333 ELLSKID 339
>ref|NP_069161.1| dTDP-glucose 4,6-dehydratase (rfbB) [Archaeoglobus fulgidus]
gi|7437239|pir||D69290 dTDP-glucose 4,6-dehydratase
(rfbB) homolog - Archaeoglobus fulgidus
gi|2650312|gb|AAB90911.1| dTDP-glucose 4,6-dehydratase
(rfbB) [Archaeoglobus fulgidus DSM 4304]
Length = 332
Score = 35.0 bits (79), Expect = 0.54
Identities = 16/40 (40%), Positives = 25/40 (62%)
Frame = -3
Query: 452 QIKWPAGPKPSYPEALRQFVSWMLQPQAFMRPRIDDIIIH 333
++KW PK S+ E +R+ V W LQ + + RP D+ I+H
Sbjct: 287 ELKWR--PKISFEEGIRRTVEWYLQNEWWWRPLADERILH 324
>ref|ZP_00047386.1| hypothetical protein [Lactobacillus gasseri]
Length = 180
Score = 34.3 bits (77), Expect = 0.93
Identities = 14/51 (27%), Positives = 32/51 (62%)
Frame = -1
Query: 319 LQSLLIELLGNSWSWLHIAFGLRIRVHLLSSYISMD*KAVVVPWLRVNLMY 167
L +L++ +L N++ W+H+ +GL +R L + K ++ PW+++ ++Y
Sbjct: 122 LVTLIVNVLMNTY-WIHLLYGLDLRAAFLQRIL----KELITPWIQIVVLY 167
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 458,123,816
Number of Sequences: 1393205
Number of extensions: 9313222
Number of successful extensions: 20559
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 20116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20556
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
