Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014482A_C01 KMC014482A_c01
(635 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB76910.1| hypothetical protein [Cicer arietinum] 66 3e-10
dbj|BAC42375.1| unknown protein [Arabidopsis thaliana] 40 0.020
ref|NP_189083.1| protein kinase, putative; protein id: At3g24400... 37 0.22
ref|NP_505801.1| C6 domain and Thrombospondin type 1 domain cont... 36 0.49
pir||T12504 hypothetical protein DKFZp434A062.1 - human (fragmen... 35 0.83
>emb|CAB76910.1| hypothetical protein [Cicer arietinum]
Length = 342
Score = 66.2 bits (160), Expect = 3e-10
Identities = 50/96 (52%), Positives = 61/96 (63%), Gaps = 11/96 (11%)
Frame = -1
Query: 635 EPPPFTPS-RTGSLPPTLSTDPLSPPSPAGSYQQSSRISKERNLSHGT--------EAET 483
E PP TPS R SLPP DP SP + SYQQSS+IS E NL + E +T
Sbjct: 247 ELPPVTPSSRIASLPPIRPADPQSPSNTVESYQQSSQIS-EINLPSSSVGPMKTPIENKT 305
Query: 482 PGSSS-GLFGLFSNVSASF-LSRTRSATDAVVQKTR 381
GSSS G FGL N+S+ + L+RTRSAT+AV+Q+TR
Sbjct: 306 NGSSSGGFFGL--NLSSVYTLTRTRSATNAVLQQTR 339
>dbj|BAC42375.1| unknown protein [Arabidopsis thaliana]
Length = 343
Score = 40.4 bits (93), Expect = 0.020
Identities = 32/89 (35%), Positives = 45/89 (49%), Gaps = 9/89 (10%)
Frame = -1
Query: 635 EPPPFTPS-RTGSLPPTLSTDPLSPPSPAGSYQQSSRISKERNLS-------HGTEA-ET 483
E P TPS RT SLPP + SP + G+ Q + +++S +GT + ET
Sbjct: 249 EAAPMTPSSRTLSLPPASPRESQSPSTSNGAQQSRGPLQHTQSMSGLKEISENGTHSGET 308
Query: 482 PGSSSGLFGLFSNVSASFLSRTRSATDAV 396
G++S GLFS S + RTRS + V
Sbjct: 309 TGNTSS--GLFSIFSIPRIGRTRSVVNTV 335
>ref|NP_189083.1| protein kinase, putative; protein id: At3g24400.1 [Arabidopsis
thaliana]
Length = 694
Score = 37.0 bits (84), Expect = 0.22
Identities = 26/66 (39%), Positives = 29/66 (43%), Gaps = 12/66 (18%)
Frame = -1
Query: 632 PPPFTPSRTGSLPP----TLSTDPLSPPSPA--------GSYQQSSRISKERNLSHGTEA 489
PPP +P R S PP T ST P SPP P+ GS S S T +
Sbjct: 149 PPPSSPLRPSSPPPPSPATPSTPPRSPPPPSTPTPPPRVGSLSPPPPASPSGGRSPSTPS 208
Query: 488 ETPGSS 471
TPGSS
Sbjct: 209 TTPGSS 214
>ref|NP_505801.1| C6 domain and Thrombospondin type 1 domain containing protein
[Caenorhabditis elegans] gi|7504031|pir||T21064
hypothetical protein F53B7.5 - Caenorhabditis elegans
gi|3876064|emb|CAA96634.1| Hypothetical protein F53B7.5
[Caenorhabditis elegans] gi|3877441|emb|CAA96654.1|
Hypothetical protein F53B7.5 [Caenorhabditis elegans]
Length = 2761
Score = 35.8 bits (81), Expect = 0.49
Identities = 20/67 (29%), Positives = 31/67 (45%)
Frame = -1
Query: 584 STDPLSPPSPAGSYQQSSRISKERNLSHGTEAETPGSSSGLFGLFSNVSASFLSRTRSAT 405
S P++ P+P+ + Q SS S N T TPG +SG + + S S +S +
Sbjct: 2542 SPAPITTPAPSSTTQSSSGPSASCNTGFVTAVSTPGYTSGFMTVDTTTSGSIMSADITCA 2601
Query: 404 DAVVQKT 384
V +T
Sbjct: 2602 SPVTSQT 2608
>pir||T12504 hypothetical protein DKFZp434A062.1 - human (fragment)
gi|5262672|emb|CAB45769.1| hypothetical protein [Homo
sapiens]
Length = 194
Score = 35.0 bits (79), Expect = 0.83
Identities = 24/71 (33%), Positives = 30/71 (41%), Gaps = 15/71 (21%)
Frame = -1
Query: 632 PPPFTPSRTGSLPPTLSTDPLSPPSPAGSYQQSSR---------------ISKERNLSHG 498
PPP SLPP+ DP P SP S Q +R + KE+ +SH
Sbjct: 30 PPPIRLWTPSSLPPSTLPDP--PKSPGSSLPQGTRSTAPSIPNGPDSQRGVRKEKAISHR 87
Query: 497 TEAETPGSSSG 465
PGSS+G
Sbjct: 88 LILLAPGSSTG 98
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 567,002,756
Number of Sequences: 1393205
Number of extensions: 12537752
Number of successful extensions: 43890
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 36618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43288
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 26439068301
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
