Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014481A_C01 KMC014481A_c01
(514 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175426.1| hypothetical protein; protein id: At1g50040.1, ... 111 4e-24
gb|AAM62635.1| unknown [Arabidopsis thaliana] 111 6e-24
gb|AAL60032.1| unknown protein [Arabidopsis thaliana] 111 6e-24
ref|NP_188602.1| unknown protein; protein id: At3g19680.1, suppo... 111 6e-24
ref|NP_172473.1| unknown protein; protein id: At1g10020.1 [Arabi... 99 4e-20
>ref|NP_175426.1| hypothetical protein; protein id: At1g50040.1, supported by cDNA:
gi_18389271, supported by cDNA: gi_20258934 [Arabidopsis
thaliana] gi|25354742|pir||H96536 hypothetical protein
F2J10.8 [imported] - Arabidopsis thaliana
gi|8569096|gb|AAF76441.1|AC015445_8 ESTs gb|AI994059,
gb|T43740 come from this gene. [Arabidopsis thaliana]
gi|18389272|gb|AAL67079.1| unknown protein [Arabidopsis
thaliana] gi|20258935|gb|AAM14183.1| unknown protein
[Arabidopsis thaliana]
Length = 460
Score = 111 bits (278), Expect = 4e-24
Identities = 61/84 (72%), Positives = 66/84 (77%), Gaps = 2/84 (2%)
Frame = -1
Query: 514 SGSGSDFGFE--PQFQYKGFVMSAKVDGERKSSRPEVEVGVKHVTCTEDAAAFVALAAAM 341
SGSGSDF F Q GFVMS +V G K S+P+VEVGVKHVTCTEDAAA VALAAA+
Sbjct: 374 SGSGSDFRFSLSQAQQNLGFVMSTRVQGVEKQSKPKVEVGVKHVTCTEDAAAHVALAAAV 433
Query: 340 DLSMDACKLFSQKLRKELRQ*IRV 269
DLSMDAC+LFSQKLR ELRQ RV
Sbjct: 434 DLSMDACRLFSQKLRNELRQPSRV 457
>gb|AAM62635.1| unknown [Arabidopsis thaliana]
Length = 210
Score = 111 bits (277), Expect = 6e-24
Identities = 61/84 (72%), Positives = 68/84 (80%), Gaps = 6/84 (7%)
Frame = -1
Query: 514 SGSGSDFGFE-PQF-----QYKGFVMSAKVDGERKSSRPEVEVGVKHVTCTEDAAAFVAL 353
SGSGSDFG+ PQ Q +GFVMSA V+G K S+PEVEVGV HVTCTEDAAA VAL
Sbjct: 120 SGSGSDFGYLLPQHPSAAAQNRGFVMSATVEGVGKRSKPEVEVGVTHVTCTEDAAAHVAL 179
Query: 352 AAAMDLSMDACKLFSQKLRKELRQ 281
AAA+DLS+DAC+LFS KLRKELRQ
Sbjct: 180 AAAVDLSLDACRLFSHKLRKELRQ 203
>gb|AAL60032.1| unknown protein [Arabidopsis thaliana]
Length = 491
Score = 111 bits (277), Expect = 6e-24
Identities = 61/84 (72%), Positives = 68/84 (80%), Gaps = 6/84 (7%)
Frame = -1
Query: 514 SGSGSDFGFE-PQF-----QYKGFVMSAKVDGERKSSRPEVEVGVKHVTCTEDAAAFVAL 353
SGSGSDFG+ PQ Q +GFVMSA V+G K S+PEVEVGV HVTCTEDAAA VAL
Sbjct: 401 SGSGSDFGYLLPQHPSAAAQNRGFVMSATVEGVGKRSKPEVEVGVTHVTCTEDAAAHVAL 460
Query: 352 AAAMDLSMDACKLFSQKLRKELRQ 281
AAA+DLS+DAC+LFS KLRKELRQ
Sbjct: 461 AAAVDLSLDACRLFSHKLRKELRQ 484
>ref|NP_188602.1| unknown protein; protein id: At3g19680.1, supported by cDNA:
gi_18176371 [Arabidopsis thaliana]
gi|25354743|pir||T52398 hypothetical protein MMB12.17
[imported] - Arabidopsis thaliana
gi|9294435|dbj|BAB02555.1|
gb|AAC34331.1~gene_id:MMB12.17~similar to unknown
protein [Arabidopsis thaliana]
gi|23297407|gb|AAN12962.1| unknown protein [Arabidopsis
thaliana]
Length = 491
Score = 111 bits (277), Expect = 6e-24
Identities = 61/84 (72%), Positives = 68/84 (80%), Gaps = 6/84 (7%)
Frame = -1
Query: 514 SGSGSDFGFE-PQF-----QYKGFVMSAKVDGERKSSRPEVEVGVKHVTCTEDAAAFVAL 353
SGSGSDFG+ PQ Q +GFVMSA V+G K S+PEVEVGV HVTCTEDAAA VAL
Sbjct: 401 SGSGSDFGYLLPQHPSAAAQNRGFVMSATVEGVGKRSKPEVEVGVTHVTCTEDAAAHVAL 460
Query: 352 AAAMDLSMDACKLFSQKLRKELRQ 281
AAA+DLS+DAC+LFS KLRKELRQ
Sbjct: 461 AAAVDLSLDACRLFSHKLRKELRQ 484
>ref|NP_172473.1| unknown protein; protein id: At1g10020.1 [Arabidopsis thaliana]
gi|7487490|pir||T00621 hypothetical protein T27I1.4 -
Arabidopsis thaliana gi|3540181|gb|AAC34331.1| Unknown
protein [Arabidopsis thaliana]
Length = 461
Score = 98.6 bits (244), Expect = 4e-20
Identities = 50/76 (65%), Positives = 62/76 (80%), Gaps = 1/76 (1%)
Frame = -1
Query: 511 GSGS-DFGFEPQFQYKGFVMSAKVDGERKSSRPEVEVGVKHVTCTEDAAAFVALAAAMDL 335
GSG +G P YKGFVMSA V+GE K S+P VEV V+HV+C EDAAA+VAL+AA+DL
Sbjct: 380 GSGDYGYGLWPWNVYKGFVMSASVEGEGKCSKPCVEVSVQHVSCMEDAAAYVALSAAIDL 439
Query: 334 SMDACKLFSQKLRKEL 287
SMDAC+LF+Q++RKEL
Sbjct: 440 SMDACRLFNQRMRKEL 455
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 445,951,008
Number of Sequences: 1393205
Number of extensions: 10435021
Number of successful extensions: 90081
Number of sequences better than 10.0: 994
Number of HSP's better than 10.0 without gapping: 52013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 76211
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
