Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014471A_C01 KMC014471A_c01
(592 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T51178 actin ACT2 [imported] - Striga asiatica gi|1531674|g... 208 4e-53
pir||T51176 actin [imported] - mung bean gi|6934188|gb|AAF31643.... 208 4e-53
pir||T51180 actin [imported] - Picea rubens gi|6103623|gb|AAF036... 208 4e-53
gb|AAC60565.1| actin [Striga asiatica] 208 4e-53
gb|AAF71266.1|AF246716_1 actin-like protein [Phalaenopsis sp. 'T... 207 8e-53
>pir||T51178 actin ACT2 [imported] - Striga asiatica gi|1531674|gb|AAC49652.1|
actin [Striga asiatica]
Length = 377
Score = 208 bits (530), Expect = 4e-53
Identities = 102/102 (100%), Positives = 102/102 (100%)
Frame = -2
Query: 591 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP 412
IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP
Sbjct: 276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP 335
Query: 411 ERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 286
ERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF
Sbjct: 336 ERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
>pir||T51176 actin [imported] - mung bean gi|6934188|gb|AAF31643.1|AF143208_1
actin [Vigna radiata]
Length = 377
Score = 208 bits (530), Expect = 4e-53
Identities = 102/102 (100%), Positives = 102/102 (100%)
Frame = -2
Query: 591 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP 412
IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP
Sbjct: 276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP 335
Query: 411 ERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 286
ERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF
Sbjct: 336 ERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
>pir||T51180 actin [imported] - Picea rubens gi|6103623|gb|AAF03692.1|AF172094_1
actin [Picea rubens]
Length = 377
Score = 208 bits (530), Expect = 4e-53
Identities = 102/102 (100%), Positives = 102/102 (100%)
Frame = -2
Query: 591 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP 412
IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP
Sbjct: 276 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP 335
Query: 411 ERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 286
ERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF
Sbjct: 336 ERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
>gb|AAC60565.1| actin [Striga asiatica]
Length = 114
Score = 208 bits (530), Expect = 4e-53
Identities = 102/102 (100%), Positives = 102/102 (100%)
Frame = -2
Query: 591 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP 412
IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP
Sbjct: 13 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP 72
Query: 411 ERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 286
ERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF
Sbjct: 73 ERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 114
>gb|AAF71266.1|AF246716_1 actin-like protein [Phalaenopsis sp. 'True Lady']
Length = 214
Score = 207 bits (527), Expect = 8e-53
Identities = 101/102 (99%), Positives = 102/102 (99%)
Frame = -2
Query: 591 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP 412
IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP
Sbjct: 113 IHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPP 172
Query: 411 ERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 286
ERKYSVWIGGSILASLSTFQQMWI+KAEYDESGPSIVHRKCF
Sbjct: 173 ERKYSVWIGGSILASLSTFQQMWISKAEYDESGPSIVHRKCF 214
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 536,373,319
Number of Sequences: 1393205
Number of extensions: 12058965
Number of successful extensions: 37238
Number of sequences better than 10.0: 1353
Number of HSP's better than 10.0 without gapping: 35821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37023
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
