Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014459A_C01 KMC014459A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173799.1| trehalose 6-phosphate synthase, putative; prote... 171 5e-42
ref|NP_179460.1| putative trehalose-6-phosphate synthase; protei... 164 5e-40
gb|AAK68805.1| Unknown protein [Arabidopsis thaliana] gi|2014841... 164 5e-40
pir||C96703 hypothetical protein T23K23.13 [imported] - Arabidop... 162 3e-39
dbj|BAB56048.1| putative trehalose-6-phosphate synthase homolog ... 162 3e-39
>ref|NP_173799.1| trehalose 6-phosphate synthase, putative; protein id: At1g23870.1,
supported by cDNA: gi_18176366, supported by cDNA:
gi_20465286 [Arabidopsis thaliana]
gi|9369388|gb|AAF87136.1|AC002423_1 T23E23.3 [Arabidopsis
thaliana] gi|18176367|gb|AAL60031.1| putative trehalose
6-phosphate synthase [Arabidopsis thaliana]
gi|20465287|gb|AAM20007.1| putative trehalose 6-phosphate
synthase [Arabidopsis thaliana]
Length = 867
Score = 171 bits (433), Expect = 5e-42
Identities = 82/119 (68%), Positives = 101/119 (83%)
Frame = -1
Query: 556 ELLDHLENVLANEPVVVKRGQHIVEVKPQGVSKGMVVEELISTMRSEGKSPDFLLCIGDD 377
ELLDHLE+VLANEPVVVKRGQHIVEVKPQGVSKG+ VE++I M +G PD ++CIGDD
Sbjct: 726 ELLDHLESVLANEPVVVKRGQHIVEVKPQGVSKGLAVEKVIHQMVEDGNPPDMVMCIGDD 785
Query: 376 RSDEDMFESIASSVSNPALPTISKVFACTVGQKPSMAKFYLEDTSEVINLLEGLATASA 200
RSDEDMFESI S+V+NP LP ++FACTVG+KPS AK++L+D S+V+ LL GLA A++
Sbjct: 786 RSDEDMFESILSTVTNPDLPMPPEIFACTVGRKPSKAKYFLDDVSDVLKLLGGLAAATS 844
>ref|NP_179460.1| putative trehalose-6-phosphate synthase; protein id: At2g18700.1
[Arabidopsis thaliana] gi|25347122|pir||E84567 probable
trehalose-6-phosphate synthase [imported] - Arabidopsis
thaliana gi|4185136|gb|AAD08939.1| putative
trehalose-6-phosphate synthase [Arabidopsis thaliana]
Length = 862
Score = 164 bits (416), Expect = 5e-40
Identities = 86/119 (72%), Positives = 99/119 (82%), Gaps = 1/119 (0%)
Frame = -1
Query: 556 ELLDHLENVLANEPVVVKRGQHIVEVKPQGVSKGMVVEELISTMR-SEGKSPDFLLCIGD 380
ELLDHLE+VL NEPVVVKRGQHIVEVKPQGVSKG VVE LI+TMR ++GK PDFLLCIGD
Sbjct: 718 ELLDHLESVLTNEPVVVKRGQHIVEVKPQGVSKGKVVEHLIATMRNTKGKRPDFLLCIGD 777
Query: 379 DRSDEDMFESIASSVSNPALPTISKVFACTVGQKPSMAKFYLEDTSEVINLLEGLATAS 203
DRSDEDMF+SI ++ + +VFACTVGQKPS AK+YL+DT VI +LE LA+AS
Sbjct: 778 DRSDEDMFDSIVKHQDVSSI-GLEEVFACTVGQKPSKAKYYLDDTPSVIKMLEWLASAS 835
>gb|AAK68805.1| Unknown protein [Arabidopsis thaliana] gi|20148417|gb|AAM10099.1|
unknown protein [Arabidopsis thaliana]
Length = 298
Score = 164 bits (416), Expect = 5e-40
Identities = 86/119 (72%), Positives = 99/119 (82%), Gaps = 1/119 (0%)
Frame = -1
Query: 556 ELLDHLENVLANEPVVVKRGQHIVEVKPQGVSKGMVVEELISTMR-SEGKSPDFLLCIGD 380
ELLDHLE+VL NEPVVVKRGQHIVEVKPQGVSKG VVE LI+TMR ++GK PDFLLCIGD
Sbjct: 154 ELLDHLESVLTNEPVVVKRGQHIVEVKPQGVSKGKVVEHLIATMRNTKGKRPDFLLCIGD 213
Query: 379 DRSDEDMFESIASSVSNPALPTISKVFACTVGQKPSMAKFYLEDTSEVINLLEGLATAS 203
DRSDEDMF+SI ++ + +VFACTVGQKPS AK+YL+DT VI +LE LA+AS
Sbjct: 214 DRSDEDMFDSIVKHQDVSSI-GLEEVFACTVGQKPSKAKYYLDDTPSVIKMLEWLASAS 271
>pir||C96703 hypothetical protein T23K23.13 [imported] - Arabidopsis thaliana
gi|12324075|gb|AAG52003.1|AC012563_13 putative
trehalose-6-phosphate synthase; 46897-44149 [Arabidopsis
thaliana]
Length = 847
Score = 162 bits (410), Expect = 3e-39
Identities = 75/122 (61%), Positives = 97/122 (79%)
Frame = -1
Query: 556 ELLDHLENVLANEPVVVKRGQHIVEVKPQGVSKGMVVEELISTMRSEGKSPDFLLCIGDD 377
ELLDHLE+VLANEPV VKRGQ+ VEVKPQGVSKG++ ++S M+ G P+F+LCIGDD
Sbjct: 724 ELLDHLESVLANEPVTVKRGQNYVEVKPQGVSKGLIARRMLSMMQERGTLPEFVLCIGDD 783
Query: 376 RSDEDMFESIASSVSNPALPTISKVFACTVGQKPSMAKFYLEDTSEVINLLEGLATASAP 197
RSDEDMFE I SS P++ +++FACTVGQKPS AK+YL+DT+E++ L+ GLA+ +
Sbjct: 784 RSDEDMFEVICSSTEGPSIAPRAEIFACTVGQKPSKAKYYLDDTTEIVRLMHGLASVTDQ 843
Query: 196 AT 191
T
Sbjct: 844 IT 845
>dbj|BAB56048.1| putative trehalose-6-phosphate synthase homolog [Oryza sativa
(japonica cultivar-group)]
Length = 912
Score = 162 bits (410), Expect = 3e-39
Identities = 80/132 (60%), Positives = 99/132 (74%)
Frame = -1
Query: 556 ELLDHLENVLANEPVVVKRGQHIVEVKPQGVSKGMVVEELISTMRSEGKSPDFLLCIGDD 377
ELLDHLE+VLANEPV VK GQ IVEVKPQGVSKG+V E+++ +M+ GK DF+LCIGDD
Sbjct: 758 ELLDHLESVLANEPVSVKSGQFIVEVKPQGVSKGVVAEKILVSMKERGKQADFVLCIGDD 817
Query: 376 RSDEDMFESIASSVSNPALPTISKVFACTVGQKPSMAKFYLEDTSEVINLLEGLATASAP 197
RSDEDMFE+IA ++ + T + +FACTVGQKPS AKFYL+DT EV+ +L LA A+ P
Sbjct: 818 RSDEDMFENIADTIKKGMVATNTSLFACTVGQKPSKAKFYLDDTFEVVTMLSALADATEP 877
Query: 196 ATMPIASQELQE 161
+ E E
Sbjct: 878 EPETDLTDEFDE 889
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 458,720,060
Number of Sequences: 1393205
Number of extensions: 9289130
Number of successful extensions: 25037
Number of sequences better than 10.0: 146
Number of HSP's better than 10.0 without gapping: 24354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24991
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
