Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014458A_C01 KMC014458A_c01
(623 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||C86430 hypothetical protein F26G16.14 - Arabidopsis thalian... 73 3e-12
ref|NP_174340.2| hypothetical protein; protein id: At1g30520.1, ... 73 3e-12
ref|NP_217021.1| fadD35 [Mycobacterium tuberculosis H37Rv] gi|15... 39 0.055
ref|NP_070115.1| acetyl-CoA synthetase (acs-6) [Archaeoglobus fu... 36 0.36
ref|ZP_00083428.1| hypothetical protein [Pseudomonas fluorescens... 36 0.47
>pir||C86430 hypothetical protein F26G16.14 - Arabidopsis thaliana
gi|6634775|gb|AAF19755.1|AC009917_14 Contains similarity
to gi|34845 luciferase YE protein from Pyrophorus
plagiophthalamus, and contains an AMP-binding PF|00501
domain. [Arabidopsis thaliana]
Length = 581
Score = 73.2 bits (178), Expect = 3e-12
Identities = 31/61 (50%), Positives = 46/61 (74%)
Frame = -3
Query: 603 FHLTSLNLQPHCMENNLSRFKIPRMFIEWKKPFPLTTTGKIRRDQLQKEVLSQLQSLHSN 424
F L+S L+ HC NL+ FKIP+ F+ W+K FPLTTTGK++RD+++++VLS Q + S+
Sbjct: 521 FQLSSETLKHHCRTQNLTGFKIPKRFVRWEKQFPLTTTGKVKRDEVRRQVLSHFQIMTSS 580
Query: 423 L 421
L
Sbjct: 581 L 581
>ref|NP_174340.2| hypothetical protein; protein id: At1g30520.1, supported by cDNA:
gi_17979486 [Arabidopsis thaliana]
gi|17979487|gb|AAL50080.1| At1g30520/F26G16_3
[Arabidopsis thaliana]
Length = 560
Score = 73.2 bits (178), Expect = 3e-12
Identities = 31/61 (50%), Positives = 46/61 (74%)
Frame = -3
Query: 603 FHLTSLNLQPHCMENNLSRFKIPRMFIEWKKPFPLTTTGKIRRDQLQKEVLSQLQSLHSN 424
F L+S L+ HC NL+ FKIP+ F+ W+K FPLTTTGK++RD+++++VLS Q + S+
Sbjct: 500 FQLSSETLKHHCRTQNLTGFKIPKRFVRWEKQFPLTTTGKVKRDEVRRQVLSHFQIMTSS 559
Query: 423 L 421
L
Sbjct: 560 L 560
>ref|NP_217021.1| fadD35 [Mycobacterium tuberculosis H37Rv]
gi|15842033|ref|NP_337070.1| substrate--CoA ligase
[Mycobacterium tuberculosis CDC1551]
gi|7437876|pir||A70551 probable acid-CoA ligase (EC
6.2.1.-) fadD35 - Mycobacterium tuberculosis (strain
H37RV) gi|2113938|emb|CAB08923.1| fadD35 [Mycobacterium
tuberculosis H37Rv] gi|13882311|gb|AAK46884.1|
substrate--CoA ligase [Mycobacterium tuberculosis
CDC1551]
Length = 547
Score = 38.9 bits (89), Expect = 0.055
Identities = 20/53 (37%), Positives = 35/53 (65%)
Frame = -3
Query: 597 LTSLNLQPHCMENNLSRFKIPRMFIEWKKPFPLTTTGKIRRDQLQKEVLSQLQ 439
LT L+ +CM ++RFKIPR ++ FP+T TGK+R+ +++++ L L+
Sbjct: 494 LTIERLREYCM-GRIARFKIPR-YLWIVDEFPMTVTGKVRKVEMRQQALEYLR 544
>ref|NP_070115.1| acetyl-CoA synthetase (acs-6) [Archaeoglobus fulgidus]
gi|7451045|pir||F69410 acetyl-CoA synthetase (acs-6)
homolog - Archaeoglobus fulgidus
gi|2649292|gb|AAB89958.1| acetyl-CoA synthetase (acs-6)
[Archaeoglobus fulgidus DSM 4304]
Length = 586
Score = 36.2 bits (82), Expect = 0.36
Identities = 21/44 (47%), Positives = 31/44 (69%)
Frame = -3
Query: 591 SLNLQPHCMENNLSRFKIPRMFIEWKKPFPLTTTGKIRRDQLQK 460
+L L HC +N L+R+KIPR+ IE+ P T +GKIRR +L++
Sbjct: 518 ALELFMHC-KNILARYKIPRI-IEFVPELPKTISGKIRRVELRQ 559
>ref|ZP_00083428.1| hypothetical protein [Pseudomonas fluorescens PfO-1]
Length = 585
Score = 35.8 bits (81), Expect = 0.47
Identities = 19/53 (35%), Positives = 34/53 (63%)
Frame = -3
Query: 594 TSLNLQPHCMENNLSRFKIPRMFIEWKKPFPLTTTGKIRRDQLQKEVLSQLQS 436
T LQ C E ++ FK PR F ++ + FP+T TGKI++ ++++ + +L+S
Sbjct: 532 TEQELQAWCKER-IAHFKTPRYF-KFVEEFPMTVTGKIQKFRMREISIEELRS 582
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 546,745,776
Number of Sequences: 1393205
Number of extensions: 12259290
Number of successful extensions: 29086
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 28050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29075
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25301904073
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
