Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014454A_C01 KMC014454A_c01
(556 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN60250.1| unknown [Arabidopsis thaliana] 270 7e-72
ref|NP_189024.1| NAD dependent epimerase, putative; protein id: ... 270 7e-72
ref|NP_182056.1| putative nucleotide sugar epimerase; protein id... 219 1e-56
ref|NP_171702.1| nucleotide sugar epimerase, putative; protein i... 216 1e-55
gb|AAM61323.1| nucleotide sugar epimerase, putative [Arabidopsis... 216 1e-55
>gb|AAN60250.1| unknown [Arabidopsis thaliana]
Length = 460
Score = 270 bits (691), Expect = 7e-72
Identities = 130/158 (82%), Positives = 144/158 (90%)
Frame = -3
Query: 554 AYFFFTKAILQGKAIDVYKTVDGKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKGP 375
AYFFFTK IL GK+ID+Y+T D +EVARDFTYIDDIVKGC+GALDTAEKSTGSGGKK+G
Sbjct: 303 AYFFFTKDILHGKSIDIYRTQDNQEVARDFTYIDDIVKGCVGALDTAEKSTGSGGKKRGQ 362
Query: 374 AQLRVYNLGNTSPVPVGKLVAILESLLGTKAKKHVIKMPSNGDVPYTHANVTAAFRDFGY 195
AQLRVYNLGNTSPVPVG+LV+ILE LLGTKAKKH+IKMP NGDVPYTHANV+ A++DFGY
Sbjct: 363 AQLRVYNLGNTSPVPVGRLVSILEGLLGTKAKKHLIKMPRNGDVPYTHANVSLAYKDFGY 422
Query: 194 KPTTDLSTGLRKFVKWYVSYYGIQPRVKKENHIDSEDS 81
KPTTDL+ GLRKFVKWYV YYGIQPRVKKE +EDS
Sbjct: 423 KPTTDLAAGLRKFVKWYVGYYGIQPRVKKETS-HAEDS 459
>ref|NP_189024.1| NAD dependent epimerase, putative; protein id: At3g23820.1,
supported by cDNA: gi_13877894, supported by cDNA:
gi_15810204, supported by cDNA: gi_17065097 [Arabidopsis
thaliana] gi|9294651|dbj|BAB03000.1| nucleotide sugar
epimerase-like protein [Arabidopsis thaliana]
gi|13877895|gb|AAK44025.1|AF370210_1 putative NAD
dependent epimerase [Arabidopsis thaliana]
gi|15810205|gb|AAL07003.1| AT3g23820/F14O13_1
[Arabidopsis thaliana] gi|17065098|gb|AAL32703.1|
nucleotide sugar epimerase-like protein [Arabidopsis
thaliana] gi|22136952|gb|AAM91705.1| putative NAD
dependent epimerase [Arabidopsis thaliana]
Length = 460
Score = 270 bits (691), Expect = 7e-72
Identities = 130/158 (82%), Positives = 144/158 (90%)
Frame = -3
Query: 554 AYFFFTKAILQGKAIDVYKTVDGKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKGP 375
AYFFFTK IL GK+ID+Y+T D +EVARDFTYIDDIVKGC+GALDTAEKSTGSGGKK+G
Sbjct: 303 AYFFFTKDILHGKSIDIYRTQDNQEVARDFTYIDDIVKGCVGALDTAEKSTGSGGKKRGQ 362
Query: 374 AQLRVYNLGNTSPVPVGKLVAILESLLGTKAKKHVIKMPSNGDVPYTHANVTAAFRDFGY 195
AQLRVYNLGNTSPVPVG+LV+ILE LLGTKAKKH+IKMP NGDVPYTHANV+ A++DFGY
Sbjct: 363 AQLRVYNLGNTSPVPVGRLVSILEGLLGTKAKKHLIKMPRNGDVPYTHANVSLAYKDFGY 422
Query: 194 KPTTDLSTGLRKFVKWYVSYYGIQPRVKKENHIDSEDS 81
KPTTDL+ GLRKFVKWYV YYGIQPRVKKE +EDS
Sbjct: 423 KPTTDLAAGLRKFVKWYVGYYGIQPRVKKETS-HAEDS 459
>ref|NP_182056.1| putative nucleotide sugar epimerase; protein id: At2g45310.1
[Arabidopsis thaliana] gi|25408944|pir||A84889 probable
nucleotide sugar epimerase [imported] - Arabidopsis
thaliana gi|2583123|gb|AAB82632.1| putative nucleotide
sugar epimerase [Arabidopsis thaliana]
gi|28393645|gb|AAO42241.1| putative nucleotide sugar
epimerase [Arabidopsis thaliana]
gi|28973495|gb|AAO64072.1| putative nucleotide sugar
epimerase [Arabidopsis thaliana]
Length = 437
Score = 219 bits (559), Expect = 1e-56
Identities = 104/141 (73%), Positives = 122/141 (85%)
Frame = -3
Query: 554 AYFFFTKAILQGKAIDVYKTVDGKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKGP 375
AYFFFTK IL+GK+I ++++ + VARDFTYIDDIVKGCL ALDTAEKSTGSGGKK+GP
Sbjct: 288 AYFFFTKDILKGKSISIFESANHGTVARDFTYIDDIVKGCLAALDTAEKSTGSGGKKRGP 347
Query: 374 AQLRVYNLGNTSPVPVGKLVAILESLLGTKAKKHVIKMPSNGDVPYTHANVTAAFRDFGY 195
AQLRV+NLGNTSPVPV LV ILE L KAKK++IKMP NGDVP+THAN++ A R+ GY
Sbjct: 348 AQLRVFNLGNTSPVPVSDLVRILERQLKVKAKKNLIKMPRNGDVPFTHANISLAQRELGY 407
Query: 194 KPTTDLSTGLRKFVKWYVSYY 132
KPTTDL TGL+KFV+WY+SYY
Sbjct: 408 KPTTDLQTGLKKFVRWYLSYY 428
>ref|NP_171702.1| nucleotide sugar epimerase, putative; protein id: At1g02000.1,
supported by cDNA: 116833., supported by cDNA:
gi_12248040 [Arabidopsis thaliana]
gi|25518289|pir||A86152 hypothetical protein F22M8.13
[imported] - Arabidopsis thaliana
gi|8570451|gb|AAF76478.1|AC020622_12 Contains similarity
to CAPI protein from Staphylococcus aureus gi|P39858 and
contains a NAD dependent epimerase/dehydratase PF|01370
domain. ESTs gb|N97076, gb|AI997010 come from this
gene. [Arabidopsis thaliana]
gi|12248041|gb|AAG50112.1|AF334734_1 putative nucleotide
sugar epimerase [Arabidopsis thaliana]
Length = 434
Score = 216 bits (551), Expect = 1e-55
Identities = 101/141 (71%), Positives = 124/141 (87%)
Frame = -3
Query: 554 AYFFFTKAILQGKAIDVYKTVDGKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKGP 375
AYFFFT+ IL+GKAI +++ + VARDFTYIDDIVKGCLGALDTAEKSTGSGGKK+G
Sbjct: 283 AYFFFTRDILKGKAISIFEGANHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGA 342
Query: 374 AQLRVYNLGNTSPVPVGKLVAILESLLGTKAKKHVIKMPSNGDVPYTHANVTAAFRDFGY 195
AQLRV+NLGNTSPVPV LV+ILE LL KAK++++K+P NGDVP+THAN+++A R+FGY
Sbjct: 343 AQLRVFNLGNTSPVPVTDLVSILERLLKVKAKRNMMKLPRNGDVPFTHANISSAQREFGY 402
Query: 194 KPTTDLSTGLRKFVKWYVSYY 132
KP+TDL TGL+KFV+WY+ YY
Sbjct: 403 KPSTDLQTGLKKFVRWYLGYY 423
>gb|AAM61323.1| nucleotide sugar epimerase, putative [Arabidopsis thaliana]
Length = 419
Score = 216 bits (551), Expect = 1e-55
Identities = 101/141 (71%), Positives = 124/141 (87%)
Frame = -3
Query: 554 AYFFFTKAILQGKAIDVYKTVDGKEVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKKGP 375
AYFFFT+ IL+GKAI +++ + VARDFTYIDDIVKGCLGALDTAEKSTGSGGKK+G
Sbjct: 268 AYFFFTRDILKGKAISIFEGANHGTVARDFTYIDDIVKGCLGALDTAEKSTGSGGKKRGA 327
Query: 374 AQLRVYNLGNTSPVPVGKLVAILESLLGTKAKKHVIKMPSNGDVPYTHANVTAAFRDFGY 195
AQLRV+NLGNTSPVPV LV+ILE LL KAK++++K+P NGDVP+THAN+++A R+FGY
Sbjct: 328 AQLRVFNLGNTSPVPVTDLVSILERLLKVKAKRNMMKLPRNGDVPFTHANISSAQREFGY 387
Query: 194 KPTTDLSTGLRKFVKWYVSYY 132
KP+TDL TGL+KFV+WY+ YY
Sbjct: 388 KPSTDLQTGLKKFVRWYLGYY 408
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 539,266,831
Number of Sequences: 1393205
Number of extensions: 13830792
Number of successful extensions: 132518
Number of sequences better than 10.0: 936
Number of HSP's better than 10.0 without gapping: 73742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122240
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19521267756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
