Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014449A_C01 KMC014449A_c01
(621 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q43503|LCYB_LYCES Lycopene beta cyclase, chloroplast precurso... 281 5e-75
pir||S66350 lycopene beta-cyclase (EC 5.5.1.-) - tomato 281 5e-75
gb|AAK07430.1|AF321534_1 lycopene beta-cyclase [Adonis palaestina] 279 2e-74
sp|Q43415|LCYB_CAPAN Lycopene beta cyclase, chloroplast precurso... 278 3e-74
gb|AAD38049.2| lycopene cyclase [Citrus x paradisi] 276 2e-73
>sp|Q43503|LCYB_LYCES Lycopene beta cyclase, chloroplast precursor gi|7489031|pir||S72505
lycopene beta-cyclase (EC 5.5.1.-) - tomato
gi|1006673|emb|CAA60170.1| lycopene beta-cyclase
[Lycopersicon esculentum]
Length = 500
Score = 281 bits (719), Expect = 5e-75
Identities = 135/154 (87%), Positives = 145/154 (93%)
Frame = -1
Query: 621 LPQRVIGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVQYLGSDRGISGDGLSSLVWKDL 442
LPQRV+GIGGTAGMVHPSTGYMVARTLAAAP+VANAI+QYLGS+R SG+ LS+ VWKDL
Sbjct: 347 LPQRVVGIGGTAGMVHPSTGYMVARTLAAAPVVANAIIQYLGSERSHSGNELSTAVWKDL 406
Query: 441 WPIERRRQREFFCFGMDILLKLDLPGTRRFFDAFFDLEPHYWHGFLSSRLFLPELLVFGL 262
WPIERRRQREFFCFGMDILLKLDLP TRRFFDAFFDLEP YWHGFLSSRLFLPEL+VFGL
Sbjct: 407 WPIERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLFLPELIVFGL 466
Query: 261 SLFSYASNTSRIEIMAKGTVPLVNMINHLIPDKE 160
SLFS+ASNTSR EIM KGTVPLVNMIN+L+ DKE
Sbjct: 467 SLFSHASNTSRFEIMTKGTVPLVNMINNLLQDKE 500
>pir||S66350 lycopene beta-cyclase (EC 5.5.1.-) - tomato
Length = 500
Score = 281 bits (719), Expect = 5e-75
Identities = 135/154 (87%), Positives = 145/154 (93%)
Frame = -1
Query: 621 LPQRVIGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVQYLGSDRGISGDGLSSLVWKDL 442
LPQRV+GIGGTAGMVHPSTGYMVARTLAAAP+VANAI+QYLGS+R SG+ LS+ VWKDL
Sbjct: 347 LPQRVVGIGGTAGMVHPSTGYMVARTLAAAPVVANAIIQYLGSERSHSGNELSTAVWKDL 406
Query: 441 WPIERRRQREFFCFGMDILLKLDLPGTRRFFDAFFDLEPHYWHGFLSSRLFLPELLVFGL 262
WPIERRRQREFFCFGMDILLKLDLP TRRFFDAFFDLEP YWHGFLSSRLFLPEL+VFGL
Sbjct: 407 WPIERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLFLPELIVFGL 466
Query: 261 SLFSYASNTSRIEIMAKGTVPLVNMINHLIPDKE 160
SLFS+ASNTSR EIM KGTVPLVNMIN+L+ DKE
Sbjct: 467 SLFSHASNTSRFEIMTKGTVPLVNMINNLLQDKE 500
>gb|AAK07430.1|AF321534_1 lycopene beta-cyclase [Adonis palaestina]
Length = 502
Score = 279 bits (714), Expect = 2e-74
Identities = 135/154 (87%), Positives = 145/154 (93%)
Frame = -1
Query: 621 LPQRVIGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVQYLGSDRGISGDGLSSLVWKDL 442
LPQRV+GIGGTAGMVHPSTGYMVARTLAAAP+VA +IVQYLGSDR +SG+ LS+ VWKDL
Sbjct: 349 LPQRVVGIGGTAGMVHPSTGYMVARTLAAAPVVAKSIVQYLGSDRSLSGNELSAEVWKDL 408
Query: 441 WPIERRRQREFFCFGMDILLKLDLPGTRRFFDAFFDLEPHYWHGFLSSRLFLPELLVFGL 262
WPIERRRQREFFCFGMDILLKLDL GTRRFFDAFFDLEPHYWHGFLSSRLFLPELL FGL
Sbjct: 409 WPIERRRQREFFCFGMDILLKLDLQGTRRFFDAFFDLEPHYWHGFLSSRLFLPELLFFGL 468
Query: 261 SLFSYASNTSRIEIMAKGTVPLVNMINHLIPDKE 160
SLFS+ASN SRIEIMAKGTVPLVNM+N+LI D +
Sbjct: 469 SLFSHASNASRIEIMAKGTVPLVNMMNNLIQDTD 502
>sp|Q43415|LCYB_CAPAN Lycopene beta cyclase, chloroplast precursor
gi|999441|emb|CAA60119.1| lycopene synthase [Capsicum
annuum]
Length = 498
Score = 278 bits (712), Expect = 3e-74
Identities = 133/154 (86%), Positives = 145/154 (93%)
Frame = -1
Query: 621 LPQRVIGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVQYLGSDRGISGDGLSSLVWKDL 442
LPQRV+GIGGTAGMVHPSTGYMVARTLAAAP+VANAI+QYL S+R SGD LS+ VWKDL
Sbjct: 345 LPQRVVGIGGTAGMVHPSTGYMVARTLAAAPVVANAIIQYLSSERSHSGDELSAAVWKDL 404
Query: 441 WPIERRRQREFFCFGMDILLKLDLPGTRRFFDAFFDLEPHYWHGFLSSRLFLPELLVFGL 262
WPIERRRQREFFCFGMDILLKLDLP TRRFFDAFFDLEP YWHGFLSSRLFLPEL+VFGL
Sbjct: 405 WPIERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLFLPELIVFGL 464
Query: 261 SLFSYASNTSRIEIMAKGTVPLVNMINHLIPDKE 160
SLFS+ASNTSR+EIM KGT+PLV+MIN+L+ DKE
Sbjct: 465 SLFSHASNTSRLEIMTKGTLPLVHMINNLLQDKE 498
>gb|AAD38049.2| lycopene cyclase [Citrus x paradisi]
Length = 524
Score = 276 bits (706), Expect = 2e-73
Identities = 135/154 (87%), Positives = 144/154 (92%)
Frame = -1
Query: 621 LPQRVIGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVQYLGSDRGISGDGLSSLVWKDL 442
LPQRV+GIGGTAGMVHPSTGYMVARTLAAAPIVANAIV+ L SDR ISG LS+ VWKDL
Sbjct: 371 LPQRVVGIGGTAGMVHPSTGYMVARTLAAAPIVANAIVRSLSSDRSISGHKLSAEVWKDL 430
Query: 441 WPIERRRQREFFCFGMDILLKLDLPGTRRFFDAFFDLEPHYWHGFLSSRLFLPELLVFGL 262
WPIERRRQREFFCFGMDILLKLDLP TRRFFDAFFDLEP YWHGFLSSRLFLPELLVFGL
Sbjct: 431 WPIERRRQREFFCFGMDILLKLDLPATRRFFDAFFDLEPRYWHGFLSSRLFLPELLVFGL 490
Query: 261 SLFSYASNTSRIEIMAKGTVPLVNMINHLIPDKE 160
SLFS+ASNTSR+EIMAKGT+PLVNMIN+L+ D +
Sbjct: 491 SLFSHASNTSRLEIMAKGTLPLVNMINNLVQDTD 524
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 547,074,058
Number of Sequences: 1393205
Number of extensions: 12108591
Number of successful extensions: 32342
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 30865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32276
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
