Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014447A_C01 KMC014447A_c01
(577 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC43504.1| unknown protein [Arabidopsis thaliana] 49 6e-05
ref|NP_197183.1| hypothetical protein; protein id: At5g16810.1 [... 49 6e-05
ref|NP_781658.1| conserved protein, putative N-acetylmuramoyl-L-... 36 0.40
ref|NP_478199.1| ORF_ID:alr7552~similar to ATP-dependent RNA hel... 33 3.4
gb|AAH45867.1| Similar to serine/threonine kinase 25 (STE20 homo... 32 5.7
>dbj|BAC43504.1| unknown protein [Arabidopsis thaliana]
Length = 418
Score = 48.5 bits (114), Expect = 6e-05
Identities = 21/28 (75%), Positives = 26/28 (92%)
Frame = -2
Query: 303 IQAMLNADFRKRPTAEAVLNHRFMSGAV 220
+QAMLNAD+RKRP AEAVL+HRF++G V
Sbjct: 391 LQAMLNADYRKRPMAEAVLSHRFLNGVV 418
>ref|NP_197183.1| hypothetical protein; protein id: At5g16810.1 [Arabidopsis
thaliana] gi|11346161|pir||T51513 hypothetical protein
F5E19_150 - Arabidopsis thaliana
gi|9755733|emb|CAC01845.1| hypothetical protein
[Arabidopsis thaliana]
Length = 351
Score = 48.5 bits (114), Expect = 6e-05
Identities = 21/28 (75%), Positives = 26/28 (92%)
Frame = -2
Query: 303 IQAMLNADFRKRPTAEAVLNHRFMSGAV 220
+QAMLNAD+RKRP AEAVL+HRF++G V
Sbjct: 324 LQAMLNADYRKRPMAEAVLSHRFLNGVV 351
>ref|NP_781658.1| conserved protein, putative N-acetylmuramoyl-L-alanine amidase
[Clostridium tetani E88] gi|28203152|gb|AAO35595.1|
conserved protein, putative N-acetylmuramoyl-L-alanine
amidase [Clostridium tetani E88]
Length = 597
Score = 35.8 bits (81), Expect = 0.40
Identities = 17/37 (45%), Positives = 23/37 (61%), Gaps = 5/37 (13%)
Frame = +2
Query: 470 DPMSLNGKNLLILNENNRK-----EISSKGKTLTTKP 565
DP ++ G N+++LNEN K EI SKGKT+ P
Sbjct: 58 DPATITGDNIVVLNENGGKVPVKLEIGSKGKTVVVTP 94
>ref|NP_478199.1| ORF_ID:alr7552~similar to ATP-dependent RNA helicase [Nostoc sp.
PCC 7120] gi|25532697|pir||AE2533 hypothetical protein
alr7552 [imported] - Nostoc sp. (strain PCC 7120)
plasmid pCC7120beta gi|17134637|dbj|BAB77195.1|
ORF_ID:alr7552~similar to ATP-dependent RNA helicase
[Nostoc sp. PCC 7120]
Length = 906
Score = 32.7 bits (73), Expect = 3.4
Identities = 26/91 (28%), Positives = 41/91 (44%), Gaps = 2/91 (2%)
Frame = -2
Query: 330 LNFDVFSHEIQAMLNADFRKRPTAEAVLNHR--FMSGAVL*TSMSKNMIVCVFDQICTHG 157
LN++ F ++ +NAD RK + V NHR ++ T+ K + QIC H
Sbjct: 735 LNYNTFCVRVE--INADARKYFSV-LVKNHRKEILNKQKYITNEEKQLFESNETQICVHT 791
Query: 156 SPRHLCLSVNKISHAFGKKYFGFALLLTITN 64
HL LS+ + H + F L+ +N
Sbjct: 792 LAHHLILSLPLVEHGANSRDIDFMLVEVPSN 822
>gb|AAH45867.1| Similar to serine/threonine kinase 25 (STE20 homolog, yeast) [Danio
rerio]
Length = 424
Score = 32.0 bits (71), Expect = 5.7
Identities = 24/69 (34%), Positives = 33/69 (47%)
Frame = -2
Query: 396 HPNTLLMYYHKNVMPLN*LGSILNFDVFSHEIQAMLNADFRKRPTAEAVLNHRFMSGAVL 217
HP +L KN P GS F ++A LN D R RPTA+ +L H+F++
Sbjct: 219 HPMRVLFLIPKNTPPTL-EGSYSK--PFKEFVEACLNKDPRFRPTAKELLKHKFITRYTK 275
Query: 216 *TSMSKNMI 190
TS +I
Sbjct: 276 KTSYLTELI 284
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 492,603,045
Number of Sequences: 1393205
Number of extensions: 10061930
Number of successful extensions: 18769
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 18422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18764
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
