Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014430A_C01 KMC014430A_c01
(596 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65391.1| fatty acid elongase-like protein (cer2-like) [Ara... 164 6e-40
ref|NP_193120.1| fatty acid elongase - like protein (cer2-like);... 163 2e-39
ref|NP_566741.1| expressed protein; protein id: At3g23840.1, sup... 162 3e-39
pir||S60660 hypothetical protein - maize gi|949980|emb|CAA61258.... 129 2e-29
ref|NP_194182.1| CER2; protein id: At4g24510.1, supported by cDN... 125 5e-28
>gb|AAM65391.1| fatty acid elongase-like protein (cer2-like) [Arabidopsis thaliana]
Length = 420
Score = 164 bits (416), Expect = 6e-40
Identities = 77/150 (51%), Positives = 105/150 (69%), Gaps = 1/150 (0%)
Frame = +1
Query: 145 AGQPAQTCFTTR-CGLDLAMKLHYLRVVYFFDSEAAQGLTTMKIKEHMFQWFNHYYFTCG 321
A P++T T GLDLAMKLHYL+ VY + +E A+ LT M +K +F F+ G
Sbjct: 22 ASLPSETGTTHEPTGLDLAMKLHYLKTVYIYSAETARDLTVMDVKGPLFSVFDQNPCIIG 81
Query: 322 RFRRSESGRPFIKCNDCGSRFIEAKCKKTLDEWLAMKDWPLYKLLVSQQVIGPELSFSPS 501
RFRR ESGRP++KCNDCG+RF+E C T++EWL + D + + LV Q +GP+L+FSP
Sbjct: 82 RFRRHESGRPYLKCNDCGTRFVERHCDLTVEEWLRVPDRSVDESLVYHQPVGPDLAFSPL 141
Query: 502 VLFQLTQFKCGGISLGLSWAHVLGDPLSAS 591
+ Q+T+F CGG++LGLSWAH++GDP S S
Sbjct: 142 LYIQMTRFSCGGLALGLSWAHIMGDPFSLS 171
>ref|NP_193120.1| fatty acid elongase - like protein (cer2-like); protein id:
At4g13840.1, supported by cDNA: gi_17933316 [Arabidopsis
thaliana] gi|7459578|pir||T05253 CER2 protein homolog
F18A5.230 - Arabidopsis thaliana
gi|4455313|emb|CAB36848.1| fatty acid elongase-like
protein (cer2-like) [Arabidopsis thaliana]
gi|7268088|emb|CAB78426.1| fatty acid elongase-like
protein (cer2-like) [Arabidopsis thaliana]
gi|17933317|gb|AAL48240.1|AF446369_1 AT4g13840/F18A5_230
[Arabidopsis thaliana] gi|23308387|gb|AAN18163.1|
At4g13840/F18A5_230 [Arabidopsis thaliana]
Length = 428
Score = 163 bits (412), Expect = 2e-39
Identities = 76/148 (51%), Positives = 103/148 (69%), Gaps = 1/148 (0%)
Frame = +1
Query: 145 AGQPAQTCFTTR-CGLDLAMKLHYLRVVYFFDSEAAQGLTTMKIKEHMFQWFNHYYFTCG 321
A +P +T T GLDLAMKLHYL+ Y + +E A+ LT +KE MF F+ +T G
Sbjct: 24 ATRPTETGTTHEPTGLDLAMKLHYLKAAYIYSAETARDLTVRHLKEAMFMLFDQIAWTTG 83
Query: 322 RFRRSESGRPFIKCNDCGSRFIEAKCKKTLDEWLAMKDWPLYKLLVSQQVIGPELSFSPS 501
RF R +SGRP+IKCNDCG+RF+E +C T++EWL+ D + + LV IGPEL+FSP
Sbjct: 84 RFSRRDSGRPYIKCNDCGTRFVEGQCNLTVEEWLSKPDRSVDEFLVYHHPIGPELTFSPL 143
Query: 502 VLFQLTQFKCGGISLGLSWAHVLGDPLS 585
+ Q+T+FKCGG+ LGLSWA+++GD S
Sbjct: 144 IYVQMTRFKCGGLGLGLSWANIIGDAFS 171
>ref|NP_566741.1| expressed protein; protein id: At3g23840.1, supported by cDNA:
38849. [Arabidopsis thaliana] gi|9294653|dbj|BAB03002.1|
fatty acid elongase-like protein [Arabidopsis thaliana]
Length = 420
Score = 162 bits (410), Expect = 3e-39
Identities = 76/150 (50%), Positives = 104/150 (68%), Gaps = 1/150 (0%)
Frame = +1
Query: 145 AGQPAQTCFTTR-CGLDLAMKLHYLRVVYFFDSEAAQGLTTMKIKEHMFQWFNHYYFTCG 321
A P++T T GLDLAMKLHYL+ VY + + A+ LT M +K +F F G
Sbjct: 22 ASLPSETGTTHEPTGLDLAMKLHYLKAVYIYSAGTARDLTVMDVKAPLFSVFYQIPCIIG 81
Query: 322 RFRRSESGRPFIKCNDCGSRFIEAKCKKTLDEWLAMKDWPLYKLLVSQQVIGPELSFSPS 501
RFRR ESGRP++KCNDCG+RF+E+ C T++EWL + D + + LV Q +GP+L+FSP
Sbjct: 82 RFRRHESGRPYLKCNDCGTRFVESHCDLTVEEWLRVPDRSVDESLVYHQPVGPDLAFSPL 141
Query: 502 VLFQLTQFKCGGISLGLSWAHVLGDPLSAS 591
+ Q+T+F CGG++LGLSWAH++GDP S S
Sbjct: 142 LYIQMTRFSCGGLALGLSWAHIMGDPFSLS 171
>pir||S60660 hypothetical protein - maize gi|949980|emb|CAA61258.1| orf [Zea
mays]
Length = 426
Score = 129 bits (325), Expect = 2e-29
Identities = 64/140 (45%), Positives = 89/140 (62%), Gaps = 6/140 (4%)
Frame = +1
Query: 190 DLAMKLHYLRVVYFFDSEAAQGLTTMKIKEHMFQWFNHYYFTCGRFRRSESG------RP 351
DLA KLHYLR VY++ S GL T +K+ M W + ++ GR RR+E+ RP
Sbjct: 41 DLAFKLHYLRGVYYYRS--GDGLATKVLKDPMLPWLDDHFPVAGRVRRAETEGDGAPRRP 98
Query: 352 FIKCNDCGSRFIEAKCKKTLDEWLAMKDWPLYKLLVSQQVIGPELSFSPSVLFQLTQFKC 531
+IKCNDCG R +EA+C + + EW+ + L +V+GPEL FSP + Q+T FKC
Sbjct: 99 YIKCNDCGVRIVEARCDRDMAEWIRDAAPGRIRQLCYDKVLGPELFFSPLLYVQITNFKC 158
Query: 532 GGISLGLSWAHVLGDPLSAS 591
GG++LG SWAH++GD SA+
Sbjct: 159 GGLALGFSWAHLIGDIPSAA 178
>ref|NP_194182.1| CER2; protein id: At4g24510.1, supported by cDNA: 33382.
[Arabidopsis thaliana] gi|7459577|pir||T05583 CER2
protein - Arabidopsis thaliana
gi|1213594|emb|CAA63618.1| responsible for fatty acid
elongation from C28 to C30 [Arabidopsis thaliana]
gi|1655786|gb|AAB17946.1| CER2 gene product
gi|4220539|emb|CAA23012.1| CER2 [Arabidopsis thaliana]
gi|7269301|emb|CAB79361.1| CER2 [Arabidopsis thaliana]
gi|21592867|gb|AAM64817.1| CER2 [Arabidopsis thaliana]
Length = 421
Score = 125 bits (313), Expect = 5e-28
Identities = 66/147 (44%), Positives = 93/147 (62%), Gaps = 12/147 (8%)
Frame = +1
Query: 187 LDLAMKLHYLRVVYFFDSEAAQGLTTMKIKEHMF---QWFNHYYFTCGRFRRSESGR--- 348
+DLAMKLHY+R VYFF + A+ T +K MF Y+ GR R S++
Sbjct: 31 MDLAMKLHYVRAVYFF--KGARDFTVADVKNTMFTLQSLLQSYHHVSGRIRMSDNDNDTS 88
Query: 349 ----PFIKCNDCGSRFIEAKCKK-TLDEWLAMKDWPL-YKLLVSQQVIGPELSFSPSVLF 510
P+I+CND G R +EA ++ T+++WL + D + ++ LV V+GP+L+FSP V
Sbjct: 89 AAAIPYIRCNDSGIRVVEANVEEFTVEKWLELDDRSIDHRFLVYDHVLGPDLTFSPLVFL 148
Query: 511 QLTQFKCGGISLGLSWAHVLGDPLSAS 591
Q+TQFKCGG+ +GLSWAH+LGD SAS
Sbjct: 149 QITQFKCGGLCIGLSWAHILGDVFSAS 175
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 554,172,595
Number of Sequences: 1393205
Number of extensions: 12252429
Number of successful extensions: 40908
Number of sequences better than 10.0: 118
Number of HSP's better than 10.0 without gapping: 35871
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40834
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
