Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014427A_C01 KMC014427A_c01
(531 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201248.1| putative protein; protein id: At5g64430.1, supp... 50 1e-05
gb|AAA45816.1| 57 kd protein 44 0.001
sp|P09855|UL21_HSV1E Protein UL21 gi|76445|pir||C24187 hypotheti... 44 0.001
ref|NP_044622.1| UL21 [Human herpesvirus 1] gi|136845|sp|P10205|... 44 0.001
ref|NP_085154.2| NG5 protein [Homo sapiens] gi|16549509|dbj|BAB7... 39 0.050
>ref|NP_201248.1| putative protein; protein id: At5g64430.1, supported by cDNA:
gi_17064915, supported by cDNA: gi_20259929, supported
by cDNA: gi_20260125 [Arabidopsis thaliana]
gi|10178224|dbj|BAB11604.1| contains similarity to
unknown protein~gb|AAD14519.1~gene_id:T12B11.2
[Arabidopsis thaliana] gi|17064916|gb|AAL32612.1|
Unknown protein [Arabidopsis thaliana]
gi|20259930|gb|AAM13312.1| unknown protein [Arabidopsis
thaliana] gi|20260126|gb|AAM12961.1| unknown protein
[Arabidopsis thaliana]
Length = 513
Score = 50.4 bits (119), Expect = 1e-05
Identities = 49/137 (35%), Positives = 64/137 (45%), Gaps = 14/137 (10%)
Frame = -3
Query: 520 RLPSDVYRE-QQPVYGGVPPPKAPYSS--AVPVTYPPAQPVKA----PAYTEGVSVVRQA 362
R+ SD YRE Q Y P +AP + A PP QP + P YT +
Sbjct: 384 RVASDTYREPHQSPYNVAQPLQAPIGTKAAQQQQPPPPQPFTSGPPPPQYTAVPPPRQVV 443
Query: 361 GLPDNTAGAYAQVAYDSATGRHVYYT-APGGVVHAPPYQGVAPP--GSTDLR--PPG--M 203
GLPD +A Y QV Y G+ VYYT AP P Y GV P G ++LR P G +
Sbjct: 444 GLPDTSA--YTQVTYTGGMGKQVYYTEAP-----PPQYHGVGLPVTGMSELRTGPDGKLV 496
Query: 202 SLGQDVKVINKVSQGSV 152
++ KV ++ S +V
Sbjct: 497 AMNMAPKVSSQSSDSAV 513
>gb|AAA45816.1| 57 kd protein
Length = 536
Score = 43.9 bits (102), Expect = 0.001
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Frame = -3
Query: 526 MPRLPSDVYREQQPVYGGVPPPKAPYSSAVPVTYPPAQPVKAPAYTEGVSVVRQAGLPDN 347
+PRLPS + ++ G+P P+ P + P T +AP G +G
Sbjct: 178 LPRLPSSLEALVSGLFDGIPAPRQPLDAHNPRTDVVITGRRAPRPIAG------SGAGSG 231
Query: 346 TAGAYAQVAYDSATGRHVYYTAPGGVVHAPPYQGV----APPGSTDLRPPGMSL 197
AGA + +H+ P GV APP PG+ D PPG +L
Sbjct: 232 GAGAKRATVSEFVQVKHIDRVGPAGVSPAPPPNNTDSSSLVPGAQDSAPPGPTL 285
>sp|P09855|UL21_HSV1E Protein UL21 gi|76445|pir||C24187 hypothetical protein - human
herpesvirus 1 (strain HFEM)
Length = 535
Score = 43.9 bits (102), Expect = 0.001
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Frame = -3
Query: 526 MPRLPSDVYREQQPVYGGVPPPKAPYSSAVPVTYPPAQPVKAPAYTEGVSVVRQAGLPDN 347
+PRLPS + ++ G+P P+ P + P T +AP G +G
Sbjct: 177 LPRLPSSLEALVSGLFDGIPAPRQPLDAHNPRTDVVITGRRAPRPIAG------SGAGSG 230
Query: 346 TAGAYAQVAYDSATGRHVYYTAPGGVVHAPPYQGV----APPGSTDLRPPGMSL 197
AGA + +H+ P GV APP PG+ D PPG +L
Sbjct: 231 GAGAKRATVSEFVQVKHIDRVGPAGVSPAPPPNNTDSSSLVPGAQDSAPPGPTL 284
>ref|NP_044622.1| UL21 [Human herpesvirus 1] gi|136845|sp|P10205|UL21_HSV11 PROTEIN
UL21 gi|73866|pir||WMBEW1 UL21 protein - human
herpesvirus 1 (strain 17) gi|59521|emb|CAA32334.1| UL21
[Human herpesvirus 1] gi|221742|dbj|BAA01667.1| UL21
[Human herpesvirus 1]
Length = 535
Score = 43.9 bits (102), Expect = 0.001
Identities = 32/114 (28%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Frame = -3
Query: 526 MPRLPSDVYREQQPVYGGVPPPKAPYSSAVPVTYPPAQPVKAPAYTEGVSVVRQAGLPDN 347
+PRLPS + ++ G+P P+ P + P T +AP G +G
Sbjct: 177 LPRLPSSLEALVSGLFDGIPAPRQPLDAHNPRTDVVITGRRAPRPIAG------SGAGSG 230
Query: 346 TAGAYAQVAYDSATGRHVYYTAPGGVVHAPPYQGV----APPGSTDLRPPGMSL 197
AGA + +H+ P GV APP PG+ D PPG +L
Sbjct: 231 GAGAKRATVSEFVQVKHIDRVGPAGVSPAPPPNNTDSSSLVPGAQDSAPPGPTL 284
>ref|NP_085154.2| NG5 protein [Homo sapiens] gi|16549509|dbj|BAB70821.1| unnamed
protein product [Homo sapiens]
Length = 306
Score = 38.5 bits (88), Expect = 0.050
Identities = 32/108 (29%), Positives = 42/108 (38%), Gaps = 2/108 (1%)
Frame = -3
Query: 526 MPRLPSDVYREQQPVYGGVPPPKAPYSSAVPVTYPPAQPVKAPAYTEGVSVVRQAGLPDN 347
+PR+P D Y ++ G +PPP P ++A P PAQ +AP + LP
Sbjct: 104 LPRMPPDPYLQETRFEGPLPPP--PPAAAAPPPPAPAQTAQAPGFVVPTHAGTVGTLP-- 159
Query: 346 TAGAYAQVAYDSATGRHVYYTAPGGVVHAPPYQGVAPPGS--TDLRPP 209
G Y Y Y V PY G P G+ T PP
Sbjct: 160 -LGGYVAPGYPLQLQPCTAYVPVYPV--GTPYAGGTPGGTGVTSTLPP 204
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 489,585,792
Number of Sequences: 1393205
Number of extensions: 11738033
Number of successful extensions: 51501
Number of sequences better than 10.0: 278
Number of HSP's better than 10.0 without gapping: 41247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49456
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17596710992
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
