Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014408A_C01 KMC014408A_c01
(688 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_181587.1| hypothetical protein; protein id: At2g40550.1 [... 180 2e-44
dbj|BAB39900.1| contains ESTs AU165886(E60331),AU030841(E60331)~... 154 1e-36
gb|AAH04183.1|AAH04183 Unknown (protein for MGC:2809) [Homo sapi... 96 5e-19
ref|NP_079110.1| hypothetical protein FLJ13081 [Homo sapiens] gi... 96 5e-19
gb|AAH00935.1|AAH00935 Unknown (protein for IMAGE:3448218) [Homo... 96 5e-19
>ref|NP_181587.1| hypothetical protein; protein id: At2g40550.1 [Arabidopsis
thaliana] gi|25408711|pir||H84830 hypothetical protein
At2g40550 [imported] - Arabidopsis thaliana
gi|2651302|gb|AAB87582.1| hypothetical protein
[Arabidopsis thaliana]
Length = 550
Score = 180 bits (456), Expect = 2e-44
Identities = 87/135 (64%), Positives = 106/135 (78%)
Frame = -1
Query: 688 DYNFMYCTMPIETDVQVLVLSEGKSNILPADVIVPFQPSATHCSEAVAAETLEAWRWYLA 509
+Y+F Y M + TDVQ+L+ SEGKSNI+PAD+++P QPS + E + ET E WR YLA
Sbjct: 416 EYDFQYYKMEMATDVQMLIFSEGKSNIMPADLVLPLQPSQVNSLEVITPETAETWRCYLA 475
Query: 508 TVRQLPHSIGSEVQKVVENDFVEARQTDRSLTPQDFSRLLTMGRLMSKSFGETSLSLEHW 329
T + L HSIG E+Q+VVEND V ARQTDRSL QD SRLLTM R+MS S+GET+LSLEHW
Sbjct: 476 TCKSLSHSIGQELQQVVENDLVAARQTDRSLGSQDLSRLLTMARMMSVSYGETTLSLEHW 535
Query: 328 QMVKDLERLRRERLK 284
QMV +LERLR+ERLK
Sbjct: 536 QMVLELERLRKERLK 550
>dbj|BAB39900.1| contains ESTs AU165886(E60331),AU030841(E60331)~similar to
Arabidopsis thaliana chromosome 2, At2g40550~unknown
protein [Oryza sativa (japonica cultivar-group)]
gi|15528764|dbj|BAB64806.1| P0701D05.20 [Oryza sativa
(japonica cultivar-group)]
Length = 539
Score = 154 bits (389), Expect = 1e-36
Identities = 74/135 (54%), Positives = 105/135 (76%)
Frame = -1
Query: 688 DYNFMYCTMPIETDVQVLVLSEGKSNILPADVIVPFQPSATHCSEAVAAETLEAWRWYLA 509
+Y+F + + + TDVQ+L+LSEGKSNILP+D+IVPF+PS+ A ++E LE+WRWYLA
Sbjct: 406 EYDFEFYKLEMATDVQLLILSEGKSNILPSDLIVPFRPSSVPAVNA-SSEELESWRWYLA 464
Query: 508 TVRQLPHSIGSEVQKVVENDFVEARQTDRSLTPQDFSRLLTMGRLMSKSFGETSLSLEHW 329
TVR LP S ++ ++++++ V A + DRSL + SR LTM ++M+ SFGE SLS+EHW
Sbjct: 465 TVRSLPQSTETDTYQMIQDEMVNAMRDDRSLGCSELSRWLTMAQIMAASFGEKSLSMEHW 524
Query: 328 QMVKDLERLRRERLK 284
QMVK+LERLR+ERL+
Sbjct: 525 QMVKELERLRKERLQ 539
>gb|AAH04183.1|AAH04183 Unknown (protein for MGC:2809) [Homo sapiens]
gi|13938197|gb|AAH07219.1|AAH07219 hypothetical protein
FLJ13081 [Homo sapiens]
Length = 640
Score = 95.9 bits (237), Expect = 5e-19
Identities = 60/152 (39%), Positives = 82/152 (53%), Gaps = 10/152 (6%)
Frame = -1
Query: 688 DYNFMYCTMPIETDVQVLVLSEGKSNILPADVIVPFQPSA---------THCSEAVAAET 536
DY+F Y M ++ V + SEG+S +LPAD + QP AV
Sbjct: 487 DYDFSYHQMEFPCNINVFITSEGRS-LLPADCQIHLQPQLIPPNMEEYMNSLLSAVLPSV 545
Query: 535 LEAWRWYLATVRQLPHSIGSEVQKVVENDFVEARQTD-RSLTPQDFSRLLTMGRLMSKSF 359
L +R YL +R L +SI E+ K VE+DFVE R+ D +S+T D +LL + R +S S
Sbjct: 546 LNKFRIYLTLLRFLEYSISDEITKAVEDDFVEMRKNDPQSITADDLHQLLVVARCLSLSA 605
Query: 358 GETSLSLEHWQMVKDLERLRRERLK*RSSCSN 263
G+T+LS E W K LE LRR RL+ + C N
Sbjct: 606 GQTTLSRERWLRAKQLESLRRTRLQ-QQKCVN 636
>ref|NP_079110.1| hypothetical protein FLJ13081 [Homo sapiens]
gi|10434931|dbj|BAB14427.1| unnamed protein product
[Homo sapiens]
Length = 642
Score = 95.9 bits (237), Expect = 5e-19
Identities = 60/152 (39%), Positives = 82/152 (53%), Gaps = 10/152 (6%)
Frame = -1
Query: 688 DYNFMYCTMPIETDVQVLVLSEGKSNILPADVIVPFQPSA---------THCSEAVAAET 536
DY+F Y M ++ V + SEG+S +LPAD + QP AV
Sbjct: 489 DYDFSYHQMEFPCNINVFITSEGRS-LLPADCQIHLQPQLIPPNMEEYMNSLLSAVLPSV 547
Query: 535 LEAWRWYLATVRQLPHSIGSEVQKVVENDFVEARQTD-RSLTPQDFSRLLTMGRLMSKSF 359
L +R YL +R L +SI E+ K VE+DFVE R+ D +S+T D +LL + R +S S
Sbjct: 548 LNKFRIYLTLLRFLEYSISDEITKAVEDDFVEMRKNDPQSITADDLHQLLVVARCLSLSA 607
Query: 358 GETSLSLEHWQMVKDLERLRRERLK*RSSCSN 263
G+T+LS E W K LE LRR RL+ + C N
Sbjct: 608 GQTTLSRERWLRAKQLESLRRTRLQ-QQKCVN 638
>gb|AAH00935.1|AAH00935 Unknown (protein for IMAGE:3448218) [Homo sapiens]
Length = 303
Score = 95.9 bits (237), Expect = 5e-19
Identities = 60/152 (39%), Positives = 82/152 (53%), Gaps = 10/152 (6%)
Frame = -1
Query: 688 DYNFMYCTMPIETDVQVLVLSEGKSNILPADVIVPFQPSA---------THCSEAVAAET 536
DY+F Y M ++ V + SEG+S +LPAD + QP AV
Sbjct: 150 DYDFSYHQMEFPCNINVFITSEGRS-LLPADCQIHLQPQLIPPNMEEYMNSLLSAVLPSV 208
Query: 535 LEAWRWYLATVRQLPHSIGSEVQKVVENDFVEARQTD-RSLTPQDFSRLLTMGRLMSKSF 359
L +R YL +R L +SI E+ K VE+DFVE R+ D +S+T D +LL + R +S S
Sbjct: 209 LNKFRIYLTLLRFLEYSISDEITKAVEDDFVEMRKNDPQSITADDLHQLLVVARCLSLSA 268
Query: 358 GETSLSLEHWQMVKDLERLRRERLK*RSSCSN 263
G+T+LS E W K LE LRR RL+ + C N
Sbjct: 269 GQTTLSRERWLRAKQLESLRRTRLQ-QQKCVN 299
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 552,545,882
Number of Sequences: 1393205
Number of extensions: 11224079
Number of successful extensions: 26980
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 26178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26962
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30835865868
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
