Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014406A_C01 KMC014406A_c01
(545 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAD17230.1| FtsH-like protein Pftf precursor [Nicotiana tabacum] 221 6e-57
emb|CAA09935.1| chloroplast protease [Capsicum annuum] 211 4e-54
gb|AAK73957.1| At2g30950/F7F1.16 [Arabidopsis thaliana] gi|20147... 209 1e-53
ref|NP_029669.1| FtsH protease (VAR2); protein id: At2g30950.1, ... 209 1e-53
gb|AAK76625.2| putative FtsH protease [Arabidopsis thaliana] 201 6e-51
>gb|AAD17230.1| FtsH-like protein Pftf precursor [Nicotiana tabacum]
Length = 693
Score = 221 bits (562), Expect = 6e-57
Identities = 115/136 (84%), Positives = 122/136 (89%), Gaps = 1/136 (0%)
Frame = -1
Query: 545 FGEPEVTTGAAGDLQQITGLAKQMVTTFGMSDIGPWSLMEA-AQSGDVIMRMMARNSMSE 369
FGEPEVTTGAAGDLQQITGLAKQMV TFGMS++GPWSLM++ AQSGDVIMRMMARNSMSE
Sbjct: 558 FGEPEVTTGAAGDLQQITGLAKQMVVTFGMSELGPWSLMDSSAQSGDVIMRMMARNSMSE 617
Query: 368 KLAEDIDAATKRISDDAYVIALRHIRNNREAIDKIVEVLLEKETLSGDEFRAILSEFVEI 189
KLAEDID A KR+SD AY IAL HIRNNREAIDKIVEVLLEKET++GDEFRAILSEFVEI
Sbjct: 618 KLAEDIDGAVKRLSDSAYEIALTHIRNNREAIDKIVEVLLEKETMTGDEFRAILSEFVEI 677
Query: 188 PVENRVPPSKTLAATV 141
P ENRV P ATV
Sbjct: 678 PAENRVAPVVPTPATV 693
>emb|CAA09935.1| chloroplast protease [Capsicum annuum]
Length = 693
Score = 211 bits (538), Expect = 4e-54
Identities = 111/136 (81%), Positives = 120/136 (87%), Gaps = 1/136 (0%)
Frame = -1
Query: 545 FGEPEVTTGAAGDLQQITGLAKQMVTTFGMSDIGPWSLMEA-AQSGDVIMRMMARNSMSE 369
FG PEVTTGAAGDLQQIT LAKQMV TFGMS++GPWSLM+A AQSGDVIMRMMARNSMSE
Sbjct: 558 FGAPEVTTGAAGDLQQITSLAKQMVVTFGMSELGPWSLMDASAQSGDVIMRMMARNSMSE 617
Query: 368 KLAEDIDAATKRISDDAYVIALRHIRNNREAIDKIVEVLLEKETLSGDEFRAILSEFVEI 189
KLAEDIDAA KR+SD AY IAL IR+NREAIDKIVEVLLE+ET++GDEFRAILSEFVEI
Sbjct: 618 KLAEDIDAAVKRLSDSAYEIALSQIRSNREAIDKIVEVLLEQETMTGDEFRAILSEFVEI 677
Query: 188 PVENRVPPSKTLAATV 141
P ENRVP + A V
Sbjct: 678 PAENRVPAAVPTPAAV 693
>gb|AAK73957.1| At2g30950/F7F1.16 [Arabidopsis thaliana] gi|20147395|gb|AAM10407.1|
At2g30950/F7F1.16 [Arabidopsis thaliana]
Length = 339
Score = 209 bits (533), Expect = 1e-53
Identities = 104/130 (80%), Positives = 116/130 (89%)
Frame = -1
Query: 545 FGEPEVTTGAAGDLQQITGLAKQMVTTFGMSDIGPWSLMEAAQSGDVIMRMMARNSMSEK 366
FG+ EVTTGA GDLQQITGLA+QMVTTFGMSDIGPWSLM+++ DVIMRMMARNSMSEK
Sbjct: 198 FGDSEVTTGAVGDLQQITGLARQMVTTFGMSDIGPWSLMDSSAQSDVIMRMMARNSMSEK 257
Query: 365 LAEDIDAATKRISDDAYVIALRHIRNNREAIDKIVEVLLEKETLSGDEFRAILSEFVEIP 186
LAEDID+A K++SD AY IAL HI+NNREA+DK+VEVLLEKET+ GDEFRAILSEF EIP
Sbjct: 258 LAEDIDSAVKKLSDSAYEIALSHIKNNREAMDKLVEVLLEKETIGGDEFRAILSEFTEIP 317
Query: 185 VENRVPPSKT 156
ENRVP S T
Sbjct: 318 PENRVPSSTT 327
>ref|NP_029669.1| FtsH protease (VAR2); protein id: At2g30950.1, supported by cDNA:
gi_7650137 [Arabidopsis thaliana]
gi|25308030|pir||F84714 probable ftsH chloroplast
proteinase [imported] - Arabidopsis thaliana
gi|3201633|gb|AAC20729.1| FtsH protease (VAR2)
[Arabidopsis thaliana]
gi|7650138|gb|AAF65925.1|AF135189_1 zinc dependent
protease [Arabidopsis thaliana]
Length = 695
Score = 209 bits (533), Expect = 1e-53
Identities = 104/130 (80%), Positives = 116/130 (89%)
Frame = -1
Query: 545 FGEPEVTTGAAGDLQQITGLAKQMVTTFGMSDIGPWSLMEAAQSGDVIMRMMARNSMSEK 366
FG+ EVTTGA GDLQQITGLA+QMVTTFGMSDIGPWSLM+++ DVIMRMMARNSMSEK
Sbjct: 554 FGDSEVTTGAVGDLQQITGLARQMVTTFGMSDIGPWSLMDSSAQSDVIMRMMARNSMSEK 613
Query: 365 LAEDIDAATKRISDDAYVIALRHIRNNREAIDKIVEVLLEKETLSGDEFRAILSEFVEIP 186
LAEDID+A K++SD AY IAL HI+NNREA+DK+VEVLLEKET+ GDEFRAILSEF EIP
Sbjct: 614 LAEDIDSAVKKLSDSAYEIALSHIKNNREAMDKLVEVLLEKETIGGDEFRAILSEFTEIP 673
Query: 185 VENRVPPSKT 156
ENRVP S T
Sbjct: 674 PENRVPSSTT 683
>gb|AAK76625.2| putative FtsH protease [Arabidopsis thaliana]
Length = 501
Score = 201 bits (510), Expect = 6e-51
Identities = 102/128 (79%), Positives = 111/128 (86%)
Frame = -1
Query: 545 FGEPEVTTGAAGDLQQITGLAKQMVTTFGMSDIGPWSLMEAAQSGDVIMRMMARNSMSEK 366
FGE EVTTGA DLQQITGLAKQMVTTFGMS+IGPWSLM++++ DVIMRMMARNSMSEK
Sbjct: 363 FGESEVTTGAVSDLQQITGLAKQMVTTFGMSEIGPWSLMDSSEQSDVIMRMMARNSMSEK 422
Query: 365 LAEDIDAATKRISDDAYVIALRHIRNNREAIDKIVEVLLEKETLSGDEFRAILSEFVEIP 186
LA DID A K +SD AY IAL IRNNREA+DKIVE+LLEKET+SGDEFRAILSEF EIP
Sbjct: 423 LANDIDTAVKTLSDKAYEIALSQIRNNREAMDKIVEILLEKETMSGDEFRAILSEFTEIP 482
Query: 185 VENRVPPS 162
ENRV S
Sbjct: 483 PENRVASS 490
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 450,930,755
Number of Sequences: 1393205
Number of extensions: 9272127
Number of successful extensions: 24148
Number of sequences better than 10.0: 310
Number of HSP's better than 10.0 without gapping: 23344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23962
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
