Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014404A_C01 KMC014404A_c01
(542 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC20790.1| contains ESTs AU056959(S21019),AU056960(S21019)~... 178 3e-44
ref|NP_197401.1| putative protein; protein id: At5g19000.1 [Arab... 176 2e-43
gb|AAM97116.1| putative protein [Arabidopsis thaliana] gi|273119... 176 2e-43
ref|NP_566275.1| expressed protein; protein id: At3g06190.1, sup... 175 4e-43
ref|NP_566212.1| expressed protein; protein id: At3g03740.1, sup... 171 5e-42
>dbj|BAC20790.1| contains ESTs AU056959(S21019),AU056960(S21019)~similar to
Arabidopsis thaliana chromosome 5, At5g19000~unknown
protein [Oryza sativa (japonica cultivar-group)]
Length = 434
Score = 178 bits (452), Expect = 3e-44
Identities = 85/115 (73%), Positives = 100/115 (86%)
Frame = +2
Query: 197 PSSSSSAHPSSSSDPATTSSTSITETVRGSHQFKITGYSLSKGIGIGKYIASDIFTVGGY 376
P SSSSA ++ + P+ T+STS+T+TV GSH FKI GY L+KGIG+GKYIAS+ FTVGGY
Sbjct: 35 PFSSSSAAAAAPAAPSETASTSVTKTVNGSHHFKIAGYPLAKGIGVGKYIASECFTVGGY 94
Query: 377 DWAIYFYPDGKSPEDNASYVSLFIALASDGTDVRALFELTLLDQSGNERHKVHSH 541
DWAIYFYPDGKSPED A+YVSLFIALAS+GTDVRALFELTL+DQSG + KVH+H
Sbjct: 95 DWAIYFYPDGKSPEDGAAYVSLFIALASEGTDVRALFELTLVDQSGKGQDKVHTH 149
>ref|NP_197401.1| putative protein; protein id: At5g19000.1 [Arabidopsis thaliana]
Length = 442
Score = 176 bits (446), Expect = 2e-43
Identities = 85/118 (72%), Positives = 96/118 (81%)
Frame = +2
Query: 188 TARPSSSSSAHPSSSSDPATTSSTSITETVRGSHQFKITGYSLSKGIGIGKYIASDIFTV 367
T R S S+ S S + T STS TETV G H+FKI GYSL+KG+G+GKY+ASD F V
Sbjct: 3 TTRVCSEVSSGSSKSLSQSLTVSTSTTETVNGFHEFKICGYSLAKGVGVGKYVASDTFMV 62
Query: 368 GGYDWAIYFYPDGKSPEDNASYVSLFIALASDGTDVRALFELTLLDQSGNERHKVHSH 541
GGY WAIYFYPDGKSPEDN+SYVSLFIALAS+G DVRALFELTL+DQSGN +HKVHSH
Sbjct: 63 GGYSWAIYFYPDGKSPEDNSSYVSLFIALASEGADVRALFELTLVDQSGNGKHKVHSH 120
>gb|AAM97116.1| putative protein [Arabidopsis thaliana] gi|27311975|gb|AAO00953.1|
putative protein [Arabidopsis thaliana]
Length = 407
Score = 176 bits (446), Expect = 2e-43
Identities = 85/118 (72%), Positives = 96/118 (81%)
Frame = +2
Query: 188 TARPSSSSSAHPSSSSDPATTSSTSITETVRGSHQFKITGYSLSKGIGIGKYIASDIFTV 367
T R S S+ S S + T STS TETV G H+FKI GYSL+KG+G+GKY+ASD F V
Sbjct: 3 TTRVCSEVSSGSSKSLSQSLTVSTSTTETVNGFHEFKICGYSLAKGVGVGKYVASDTFMV 62
Query: 368 GGYDWAIYFYPDGKSPEDNASYVSLFIALASDGTDVRALFELTLLDQSGNERHKVHSH 541
GGY WAIYFYPDGKSPEDN+SYVSLFIALAS+G DVRALFELTL+DQSGN +HKVHSH
Sbjct: 63 GGYSWAIYFYPDGKSPEDNSSYVSLFIALASEGADVRALFELTLVDQSGNGKHKVHSH 120
>ref|NP_566275.1| expressed protein; protein id: At3g06190.1, supported by cDNA:
gi_15028068, supported by cDNA: gi_20259304 [Arabidopsis
thaliana] gi|6862923|gb|AAF30312.1|AC018907_12 unknown
protein [Arabidopsis thaliana]
gi|15028069|gb|AAK76565.1| unknown protein [Arabidopsis
thaliana] gi|20259305|gb|AAM14388.1| unknown protein
[Arabidopsis thaliana]
Length = 406
Score = 175 bits (443), Expect = 4e-43
Identities = 83/106 (78%), Positives = 93/106 (87%)
Frame = +2
Query: 224 SSSSDPATTSSTSITETVRGSHQFKITGYSLSKGIGIGKYIASDIFTVGGYDWAIYFYPD 403
S S+ + T STS TET+ GSH+FKI+GYSL KG+GIGKY+ASD F VGGY WAIYFYPD
Sbjct: 14 SKSTAQSLTESTSRTETINGSHEFKISGYSLVKGMGIGKYVASDTFMVGGYSWAIYFYPD 73
Query: 404 GKSPEDNASYVSLFIALASDGTDVRALFELTLLDQSGNERHKVHSH 541
GKSPEDN+ YVSLFIALAS+G DVRALFELTL+DQSGNERHKVHSH
Sbjct: 74 GKSPEDNSVYVSLFIALASEGADVRALFELTLVDQSGNERHKVHSH 119
>ref|NP_566212.1| expressed protein; protein id: At3g03740.1, supported by cDNA:
101153. [Arabidopsis thaliana]
gi|21536509|gb|AAM60841.1| unknown [Arabidopsis
thaliana]
Length = 436
Score = 171 bits (433), Expect = 5e-42
Identities = 79/101 (78%), Positives = 91/101 (89%)
Frame = +2
Query: 239 PATTSSTSITETVRGSHQFKITGYSLSKGIGIGKYIASDIFTVGGYDWAIYFYPDGKSPE 418
P TT+S S+T+T+ GSH F I GYSL+KGIGIGK+IASD FTVGGY WAIYFYPDGK+PE
Sbjct: 4 PPTTTSLSVTQTINGSHSFTIKGYSLAKGIGIGKHIASDTFTVGGYQWAIYFYPDGKNPE 63
Query: 419 DNASYVSLFIALASDGTDVRALFELTLLDQSGNERHKVHSH 541
DN++YVS+FIALASDGTDVRALFEL+LLDQSG +HKVHSH
Sbjct: 64 DNSAYVSVFIALASDGTDVRALFELSLLDQSGKGKHKVHSH 104
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 535,420,300
Number of Sequences: 1393205
Number of extensions: 13896389
Number of successful extensions: 71136
Number of sequences better than 10.0: 246
Number of HSP's better than 10.0 without gapping: 53694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65161
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18750593680
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
