Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014397A_C01 KMC014397A_c01
(609 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_173927.1| DNA-binding protein RAV2, putative; protein id:... 113 2e-24
ref|NP_564947.1| AP2 domain protein RAP2.8 (RAV2); protein id: A... 108 7e-23
gb|AAC49774.1| AP2 domain containing protein RAP2.8 [Arabidopsis... 108 7e-23
gb|AAM63120.1| putative RAV2-like DNA-binding protein [Arabidops... 107 9e-23
dbj|BAB84620.1| DNA-binding protein RAV2-like [Oryza sativa (jap... 95 8e-19
>ref|NP_173927.1| DNA-binding protein RAV2, putative; protein id: At1g25560.1,
supported by cDNA: gi_15810260, supported by cDNA:
gi_20259538 [Arabidopsis thaliana]
gi|25403024|pir||A86386 probable DNA-binding protein
RAV2 [imported] - Arabidopsis thaliana
gi|12321505|gb|AAG50808.1|AC079281_10 DNA-binding
protein RAV2, putative [Arabidopsis thaliana]
gi|20259539|gb|AAM13889.1| putative DNA-binding protein
RAV2 [Arabidopsis thaliana] gi|21689705|gb|AAM67474.1|
putative DNA-binding protein RAV2 [Arabidopsis thaliana]
Length = 361
Score = 113 bits (283), Expect = 2e-24
Identities = 70/136 (51%), Positives = 82/136 (59%), Gaps = 3/136 (2%)
Frame = -1
Query: 609 FRYSYWNSSQSYVLTKGWSRFVKEKCLKAGDSVCFHRSTGPDRQLFIDFKVRRTNANETA 430
FRYSYWNSSQSYVLTKGWSRFVKEK L+AGD VCF RSTGPDRQL+I +KVR +
Sbjct: 254 FRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVCFERSTGPDRQLYIHWKVRSS------ 307
Query: 429 VLFGSVGPVVEPVQ-MVRLFGVNILKLPGSDANANNHNNHHAAAPMAGCCHGKR--KEME 259
PVQ +VRLFGVNI N +N + A C GK+ +E +
Sbjct: 308 -----------PVQTVVRLFGVNIF-------NVSNEKPNDVAVE----CVGKKRSREDD 345
Query: 258 LFTFECIQKPKIIGAL 211
LF+ C +K II L
Sbjct: 346 LFSLGCSKKQAIINIL 361
>ref|NP_564947.1| AP2 domain protein RAP2.8 (RAV2); protein id: At1g68840.1,
supported by cDNA: 19561., supported by cDNA:
gi_13430799, supported by cDNA: gi_15810644, supported
by cDNA: gi_3868858 [Arabidopsis thaliana]
gi|11357264|pir||T51330 DNA binding protein RAV2
[imported] - Arabidopsis thaliana
gi|3868859|dbj|BAA34251.1| RAV2 [Arabidopsis thaliana]
gi|12323214|gb|AAG51586.1|AC011665_7 putative
DNA-binding protein (RAV2-like) [Arabidopsis thaliana]
gi|12324134|gb|AAG52035.1|AC011914_5 RAV2; 17047-15989
[Arabidopsis thaliana]
gi|13430800|gb|AAK26022.1|AF360312_1 putative
DNA-binding protein(RAV2 [Arabidopsis thaliana]
gi|15810645|gb|AAL07247.1| putative DNA-binding protein
RAV2 [Arabidopsis thaliana]
Length = 352
Score = 108 bits (269), Expect = 7e-23
Identities = 67/136 (49%), Positives = 78/136 (57%), Gaps = 3/136 (2%)
Frame = -1
Query: 609 FRYSYWNSSQSYVLTKGWSRFVKEKCLKAGDSVCFHRSTGPDRQLFIDFKVRRTNANETA 430
FRYSYWNSSQSYVLTKGWSRFVKEK L+AGD V F RSTG +RQL+ID+KVR
Sbjct: 241 FRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVTFERSTGLERQLYIDWKVRS------- 293
Query: 429 VLFGSVGPVVEPVQ-MVRLFGVNILKLPGSDANANNHNNHHAAAPMAGCCHGKRKE--ME 259
GP PVQ +VRLFGV+I + N + C GKR +
Sbjct: 294 ------GPRENPVQVVVRLFGVDIFNVTTVKPN-----------DVVAVCGGKRSRDVDD 336
Query: 258 LFTFECIQKPKIIGAL 211
+F C +K II AL
Sbjct: 337 MFALRCSKKQAIINAL 352
>gb|AAC49774.1| AP2 domain containing protein RAP2.8 [Arabidopsis thaliana]
Length = 334
Score = 108 bits (269), Expect = 7e-23
Identities = 67/136 (49%), Positives = 78/136 (57%), Gaps = 3/136 (2%)
Frame = -1
Query: 609 FRYSYWNSSQSYVLTKGWSRFVKEKCLKAGDSVCFHRSTGPDRQLFIDFKVRRTNANETA 430
FRYSYWNSSQSYVLTKGWSRFVKEK L+AGD V F RSTG +RQL+ID+KVR
Sbjct: 223 FRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVTFERSTGLERQLYIDWKVRS------- 275
Query: 429 VLFGSVGPVVEPVQ-MVRLFGVNILKLPGSDANANNHNNHHAAAPMAGCCHGKRKE--ME 259
GP PVQ +VRLFGV+I + N + C GKR +
Sbjct: 276 ------GPRENPVQVVVRLFGVDIFNVTTVKPN-----------DVVAVCGGKRSRDVDD 318
Query: 258 LFTFECIQKPKIIGAL 211
+F C +K II AL
Sbjct: 319 MFALRCSKKQAIINAL 334
>gb|AAM63120.1| putative RAV2-like DNA-binding protein [Arabidopsis thaliana]
Length = 352
Score = 107 bits (268), Expect = 9e-23
Identities = 67/136 (49%), Positives = 77/136 (56%), Gaps = 3/136 (2%)
Frame = -1
Query: 609 FRYSYWNSSQSYVLTKGWSRFVKEKCLKAGDSVCFHRSTGPDRQLFIDFKVRRTNANETA 430
FRYSYWNSSQSYVLTKGWSRFVKEK L+AGD V F RSTG +RQL+ID+KVR
Sbjct: 241 FRYSYWNSSQSYVLTKGWSRFVKEKNLRAGDVVTFERSTGLERQLYIDWKVRS------- 293
Query: 429 VLFGSVGPVVEPVQ-MVRLFGVNILKLPGSDANANNHNNHHAAAPMAGCCHGKRKE--ME 259
GP PVQ +VRLFGV+I + N + C GKR +
Sbjct: 294 ------GPRENPVQVVVRLFGVDIFNVTTVKPN-----------DVVAVCGGKRSRDVDD 336
Query: 258 LFTFECIQKPKIIGAL 211
+F C K II AL
Sbjct: 337 MFALRCSNKQAIINAL 352
>dbj|BAB84620.1| DNA-binding protein RAV2-like [Oryza sativa (japonica
cultivar-group)]
Length = 393
Score = 94.7 bits (234), Expect = 8e-19
Identities = 53/90 (58%), Positives = 62/90 (68%), Gaps = 3/90 (3%)
Frame = -1
Query: 609 FRYSYWNSSQSYVLTKGWSRFVKEKCLKAGDSVCFHR---STGPDRQLFIDFKVRRTNAN 439
FRYSYWNSSQSYVLTKGWSRFVKEK L AGD V F+R S G D +LFID K+ R+
Sbjct: 270 FRYSYWNSSQSYVLTKGWSRFVKEKGLHAGDVVGFYRSAASAGDDGKLFIDCKLVRSTG- 328
Query: 438 ETAVLFGSVGPVVEPVQMVRLFGVNILKLP 349
A+ + P PV+ VRLFGV++L P
Sbjct: 329 -AALASPADQPAPSPVKAVRLFGVDLLTAP 357
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 538,061,890
Number of Sequences: 1393205
Number of extensions: 11658906
Number of successful extensions: 37316
Number of sequences better than 10.0: 108
Number of HSP's better than 10.0 without gapping: 34959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37166
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
