Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014396A_C01 KMC014396A_c01
(538 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_564732.1| expressed protein; protein id: At1g58350.1, sup... 49 5e-05
pir||T00618 hypothetical protein T27I1.1 - Arabidopsis thaliana ... 48 7e-05
gb|AAL86333.1| unknown protein [Arabidopsis thaliana] gi|2168982... 48 7e-05
ref|NP_172469.1| hypothetical protein; protein id: At1g09980.1 [... 48 7e-05
gb|AAM23272.1| PR-5x [Lycopersicon esculentum] 32 6.3
>ref|NP_564732.1| expressed protein; protein id: At1g58350.1, supported by cDNA:
gi_6520166 [Arabidopsis thaliana]
gi|25333053|pir||T52441 hypothetical protein ZW18
[imported] - Arabidopsis thaliana
gi|6520167|dbj|BAA87940.1| ZW18 [Arabidopsis thaliana]
gi|8979939|gb|AAF82253.1|AC008051_4 Identical to gene
ZW18 from Arabidopsis thaliana gb|AB028199
Length = 794
Score = 48.5 bits (114), Expect = 5e-05
Identities = 21/24 (87%), Positives = 23/24 (95%)
Frame = -1
Query: 538 AHIEFLESDIFAKFIMWSFPELFR 467
AHIEFLESDIFA+FIMWSF +LFR
Sbjct: 771 AHIEFLESDIFARFIMWSFQDLFR 794
>pir||T00618 hypothetical protein T27I1.1 - Arabidopsis thaliana
gi|3540180|gb|AAC34330.1| Unknown protein [Arabidopsis
thaliana]
Length = 837
Score = 48.1 bits (113), Expect = 7e-05
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = -1
Query: 538 AHIEFLESDIFAKFIMWSFPELFR 467
AHIEFLESD+FA+FIMWSF +LFR
Sbjct: 814 AHIEFLESDVFARFIMWSFQDLFR 837
>gb|AAL86333.1| unknown protein [Arabidopsis thaliana] gi|21689821|gb|AAM67554.1|
unknown protein [Arabidopsis thaliana]
Length = 802
Score = 48.1 bits (113), Expect = 7e-05
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = -1
Query: 538 AHIEFLESDIFAKFIMWSFPELFR 467
AHIEFLESD+FA+FIMWSF +LFR
Sbjct: 779 AHIEFLESDVFARFIMWSFQDLFR 802
>ref|NP_172469.1| hypothetical protein; protein id: At1g09980.1 [Arabidopsis
thaliana] gi|2160190|gb|AAB60753.1| F21M12.37 gene
product [Arabidopsis thaliana]
Length = 553
Score = 48.1 bits (113), Expect = 7e-05
Identities = 20/24 (83%), Positives = 23/24 (95%)
Frame = -1
Query: 538 AHIEFLESDIFAKFIMWSFPELFR 467
AHIEFLESD+FA+FIMWSF +LFR
Sbjct: 530 AHIEFLESDVFARFIMWSFQDLFR 553
>gb|AAM23272.1| PR-5x [Lycopersicon esculentum]
Length = 226
Score = 31.6 bits (70), Expect = 6.3
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Frame = +3
Query: 3 FFFFFLKVVKYSPENSLNI--NCPCTFWLGSKP 95
F FFFL +V Y+ ++ + NCP T W S P
Sbjct: 8 FIFFFLALVTYTYAATIEVRNNCPYTVWAASTP 40
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 415,167,304
Number of Sequences: 1393205
Number of extensions: 7664692
Number of successful extensions: 15299
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15281
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18173652336
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
