Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014375A_C01 KMC014375A_c01
(534 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196884.1| putative protein; protein id: At5g13800.1, supp... 86 3e-16
gb|AAK43858.1|AF370481_1 Unknown protein [Arabidopsis thaliana] 40 0.023
gb|ZP_00108198.1| hypothetical protein [Nostoc punctiforme] 40 0.023
ref|NP_195371.1| putative protein; protein id: At4g36530.1, supp... 40 0.023
ref|NP_486096.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2... 39 0.030
>ref|NP_196884.1| putative protein; protein id: At5g13800.1, supported by cDNA:
gi_15912216, supported by cDNA: gi_17979480 [Arabidopsis
thaliana] gi|10177646|dbj|BAB11108.1|
gene_id:MAC12.25~pir||S77419~similar to unknown protein
[Arabidopsis thaliana] gi|15912217|gb|AAL08242.1|
AT5g13800/MAC12_25 [Arabidopsis thaliana]
gi|17979481|gb|AAL50077.1| AT5g13800/MAC12_25
[Arabidopsis thaliana] gi|23506153|gb|AAN31088.1|
At5g13800/MAC12_25 [Arabidopsis thaliana]
Length = 484
Score = 85.9 bits (211), Expect = 3e-16
Identities = 41/83 (49%), Positives = 59/83 (70%), Gaps = 1/83 (1%)
Frame = -2
Query: 533 AGHCPHDEVPEVINFLLRGWIRNVESQGAVSLPLLEDL-DSMKSPIIDRELEFPREGSKK 357
AGHCPHDEVPEV+N+L+RGWI+++ES G +LPLLED + + I RE+EFPR+G KK
Sbjct: 391 AGHCPHDEVPEVVNYLMRGWIKHLESGGFEALPLLEDTEEDWEESRIGREIEFPRDGWKK 450
Query: 356 SVAIRYFVSSVSLMDRIRSYIKS 288
+V + + S+ + +R +S
Sbjct: 451 AVNLWLYGSNYTYWRGVRESFRS 473
>gb|AAK43858.1|AF370481_1 Unknown protein [Arabidopsis thaliana]
Length = 321
Score = 39.7 bits (91), Expect = 0.023
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = -2
Query: 533 AGHCPHDEVPEVINFLLRGWIR-NVESQGAVSLPL 432
AGHCPHDEVPE +N L W+ N+ S+ A + L
Sbjct: 285 AGHCPHDEVPEAVNKALLDWLSINIASKPASPIVL 319
>gb|ZP_00108198.1| hypothetical protein [Nostoc punctiforme]
Length = 312
Score = 39.7 bits (91), Expect = 0.023
Identities = 14/26 (53%), Positives = 20/26 (76%)
Frame = -2
Query: 533 AGHCPHDEVPEVINFLLRGWIRNVES 456
AGHCPHDEVP+ +N LL W+ ++ +
Sbjct: 287 AGHCPHDEVPDRVNQLLGDWVLSINN 312
>ref|NP_195371.1| putative protein; protein id: At4g36530.1, supported by cDNA:
36845. [Arabidopsis thaliana] gi|25407735|pir||C85431
hypothetical protein AT4g36530 [imported] - Arabidopsis
thaliana gi|4006910|emb|CAB16840.1| putative protein
[Arabidopsis thaliana] gi|7270601|emb|CAB80319.1|
putative protein [Arabidopsis thaliana]
gi|21593181|gb|AAM65130.1| unknown [Arabidopsis
thaliana]
Length = 378
Score = 39.7 bits (91), Expect = 0.023
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = -2
Query: 533 AGHCPHDEVPEVINFLLRGWIR-NVESQGAVSLPL 432
AGHCPHDEVPE +N L W+ N+ S+ A + L
Sbjct: 342 AGHCPHDEVPEAVNKALLDWLSINIASKPASPIVL 376
>ref|NP_486096.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25288882|pir||AB2063
hypothetical protein all2056 [imported] - Nostoc sp.
(strain PCC 7120) gi|17131147|dbj|BAB73755.1|
ORF_ID:all2056~hypothetical protein [Nostoc sp. PCC
7120]
Length = 312
Score = 39.3 bits (90), Expect = 0.030
Identities = 14/24 (58%), Positives = 19/24 (78%)
Frame = -2
Query: 533 AGHCPHDEVPEVINFLLRGWIRNV 462
AGHCPHDEVP +N LL+ W+ ++
Sbjct: 287 AGHCPHDEVPNQVNPLLQEWVLSI 310
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 451,833,512
Number of Sequences: 1393205
Number of extensions: 9193262
Number of successful extensions: 19675
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 19296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19674
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17885181664
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
