Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014364A_C01 KMC014364A_c01
(547 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_487053.1| hypothetical protein [Nostoc sp. PCC 7120] gi|2... 119 2e-26
ref|ZP_00072512.1| hypothetical protein [Trichodesmium erythraeu... 116 2e-25
ref|NP_682039.1| ORF_ID:tlr1249~hypothetical protein [Thermosyne... 116 2e-25
ref|NP_440408.1| hypothetical protein [Synechocystis sp. PCC 680... 116 2e-25
gb|ZP_00107581.1| hypothetical protein [Nostoc punctiforme] 115 3e-25
>ref|NP_487053.1| hypothetical protein [Nostoc sp. PCC 7120] gi|25318055|pir||AF2182
hypothetical protein all3013 [imported] - Nostoc sp.
(strain PCC 7120) gi|17132107|dbj|BAB74712.1|
ORF_ID:all3013~hypothetical protein [Nostoc sp. PCC
7120]
Length = 247
Score = 119 bits (299), Expect = 2e-26
Identities = 60/87 (68%), Positives = 70/87 (79%)
Frame = -3
Query: 545 GGKCSNPTKSGILGLIEKATPTLAAAYSISRAVKIPVMCSSGLSAVTAPMAITAGAAGVG 366
GG S PT G LGLIEKA PTLAAAY ISRAV +PV+C+SG+S VTAP+AI +GAAGVG
Sbjct: 155 GGTSSQPTHPGSLGLIEKAAPTLAAAYEISRAVSVPVLCASGISNVTAPLAIASGAAGVG 214
Query: 365 VGSAVNRLNDVVAMIAEVRSIANSLKT 285
VGSA+N+LN VAMIA VR + +LKT
Sbjct: 215 VGSAINQLNSEVAMIAAVRGLVEALKT 241
>ref|ZP_00072512.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 252
Score = 116 bits (291), Expect = 2e-25
Identities = 60/85 (70%), Positives = 68/85 (79%)
Frame = -3
Query: 545 GGKCSNPTKSGILGLIEKATPTLAAAYSISRAVKIPVMCSSGLSAVTAPMAITAGAAGVG 366
G + P G LGLIEKA PTLAAAY ISRAV IPV+C+SG+S VTAP+AI AGAAGVG
Sbjct: 155 GAVSAQPIHPGTLGLIEKAAPTLAAAYEISRAVDIPVLCASGISNVTAPLAIAAGAAGVG 214
Query: 365 VGSAVNRLNDVVAMIAEVRSIANSL 291
VGSA+NRLND VAMIA VRS+ +L
Sbjct: 215 VGSAINRLNDEVAMIAAVRSLVEAL 239
>ref|NP_682039.1| ORF_ID:tlr1249~hypothetical protein [Thermosynechococcus elongatus
BP-1] gi|22294973|dbj|BAC08801.1|
ORF_ID:tlr1249~hypothetical protein [Thermosynechococcus
elongatus BP-1]
Length = 246
Score = 116 bits (291), Expect = 2e-25
Identities = 58/91 (63%), Positives = 69/91 (75%)
Frame = -3
Query: 545 GGKCSNPTKSGILGLIEKATPTLAAAYSISRAVKIPVMCSSGLSAVTAPMAITAGAAGVG 366
GG S P G LGLIEKA PTLAAAY ISRAV +PV+C+SGLS VT P+AI AGAAGVG
Sbjct: 154 GGTSSQPHHGGTLGLIEKAAPTLAAAYEISRAVSVPVLCASGLSTVTIPLAIAAGAAGVG 213
Query: 365 VGSAVNRLNDVVAMIAEVRSIANSLKTPFQI 273
VGSAVN+LN VAM+A VR++ ++ T +
Sbjct: 214 VGSAVNQLNSEVAMVASVRALVEAVNTAIAV 244
>ref|NP_440408.1| hypothetical protein [Synechocystis sp. PCC 6803]
gi|7448327|pir||S75174 hypothetical protein slr2032 -
Synechocystis sp. (strain PCC 6803)
gi|1652164|dbj|BAA17088.1| ORF_ID:slr2032~hypothetical
protein [Synechocystis sp. PCC 6803]
Length = 248
Score = 116 bits (290), Expect = 2e-25
Identities = 57/85 (67%), Positives = 71/85 (83%)
Frame = -3
Query: 545 GGKCSNPTKSGILGLIEKATPTLAAAYSISRAVKIPVMCSSGLSAVTAPMAITAGAAGVG 366
GG + P G+LGLIEKA PTLAAA++ISRAV +PV+C+SGLS VT PMAI AGA+GVG
Sbjct: 156 GGTSAEPHHPGVLGLIEKAAPTLAAAHAISRAVNVPVLCASGLSDVTVPMAIAAGASGVG 215
Query: 365 VGSAVNRLNDVVAMIAEVRSIANSL 291
VGSA+N+LND VAM+A VR +A++L
Sbjct: 216 VGSAINQLNDQVAMVAAVRRLADAL 240
>gb|ZP_00107581.1| hypothetical protein [Nostoc punctiforme]
Length = 248
Score = 115 bits (289), Expect = 3e-25
Identities = 57/87 (65%), Positives = 68/87 (77%)
Frame = -3
Query: 545 GGKCSNPTKSGILGLIEKATPTLAAAYSISRAVKIPVMCSSGLSAVTAPMAITAGAAGVG 366
GG SNP G LGLIEKA PTLAAA+ ISR V +PV+C+SG+S VTAP+AI AGAAGVG
Sbjct: 155 GGTSSNPVHPGTLGLIEKAAPTLAAAFEISRVVSVPVLCASGISNVTAPLAIAAGAAGVG 214
Query: 365 VGSAVNRLNDVVAMIAEVRSIANSLKT 285
VGSA+N+LN +AMIA VR + +L T
Sbjct: 215 VGSAINQLNSEIAMIAAVRGLVEALAT 241
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 456,087,048
Number of Sequences: 1393205
Number of extensions: 9401929
Number of successful extensions: 34777
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 32840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34657
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
