Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014362A_C01 KMC014362A_c01
(611 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T45974 phenylalanine-tRNA synthetase-like protein - Arabido... 159 2e-38
ref|NP_567061.1| phenylalanine-tRNA synthetase-like protein; pro... 159 2e-38
ref|NP_587774.1| phenylalanyl-trna synthetase, mitochondrial pre... 108 7e-23
gb|AAO51910.1| similar to Arabidopsis thaliana (Mouse-ear cress)... 107 1e-22
gb|AAF79201.1| phenylalanyl-tRNA synthetase alpha subunit-like p... 100 2e-20
>pir||T45974 phenylalanine-tRNA synthetase-like protein - Arabidopsis thaliana
gi|6735326|emb|CAB68152.1| phenylalanine-tRNA
synthetase-like protein [Arabidopsis thaliana]
Length = 435
Score = 159 bits (403), Expect = 2e-38
Identities = 77/107 (71%), Positives = 90/107 (83%), Gaps = 1/107 (0%)
Frame = -2
Query: 610 SQFSKVHLGVKFNHFSKFPPCYKDISFWINESFTENNLCEVVRGIAGDLAEEVQLIDNF- 434
SQF K LGVKF +SK+PPCYKDISFWI++ FTENN CEVVRGIAGDL EEV+LID F
Sbjct: 329 SQFGKGELGVKFKPYSKYPPCYKDISFWISDLFTENNFCEVVRGIAGDLVEEVKLIDQFT 388
Query: 433 SPKKGMTSPCYRIAYRSMERSLTDDEINDLQWKVREQVQSKLEVVIR 293
+ KKG+TS CYRI +RSMERSLTD+E+NDLQ KVR++VQ KL V +R
Sbjct: 389 NKKKGLTSHCYRIVFRSMERSLTDEEVNDLQSKVRDEVQKKLNVELR 435
>ref|NP_567061.1| phenylalanine-tRNA synthetase-like protein; protein id:
At3g58140.1, supported by cDNA: 148366., supported by
cDNA: gi_17104696 [Arabidopsis thaliana]
gi|13877969|gb|AAK44062.1|AF370247_1 putative
phenylalanine-tRNA synthetase [Arabidopsis thaliana]
gi|17104697|gb|AAL34237.1| putative phenylalanine-tRNA
synthetase [Arabidopsis thaliana]
Length = 429
Score = 159 bits (403), Expect = 2e-38
Identities = 77/107 (71%), Positives = 90/107 (83%), Gaps = 1/107 (0%)
Frame = -2
Query: 610 SQFSKVHLGVKFNHFSKFPPCYKDISFWINESFTENNLCEVVRGIAGDLAEEVQLIDNF- 434
SQF K LGVKF +SK+PPCYKDISFWI++ FTENN CEVVRGIAGDL EEV+LID F
Sbjct: 323 SQFGKGELGVKFKPYSKYPPCYKDISFWISDLFTENNFCEVVRGIAGDLVEEVKLIDQFT 382
Query: 433 SPKKGMTSPCYRIAYRSMERSLTDDEINDLQWKVREQVQSKLEVVIR 293
+ KKG+TS CYRI +RSMERSLTD+E+NDLQ KVR++VQ KL V +R
Sbjct: 383 NKKKGLTSHCYRIVFRSMERSLTDEEVNDLQSKVRDEVQKKLNVELR 429
>ref|NP_587774.1| phenylalanyl-trna synthetase, mitochondrial precursor
[Schizosaccharomyces pombe] gi|7492286|pir||T41560
phenylalanyl-trna synthetase - fission yeast
(Schizosaccharomyces pombe) gi|3169073|emb|CAA19267.1|
phenylalanyl-trna synthetase, mitochondrial precursor
[Schizosaccharomyces pombe]
Length = 429
Score = 108 bits (269), Expect = 7e-23
Identities = 53/108 (49%), Positives = 72/108 (66%), Gaps = 3/108 (2%)
Frame = -2
Query: 607 QFSKVHLGVK---FNHFSKFPPCYKDISFWINESFTENNLCEVVRGIAGDLAEEVQLIDN 437
+FSK L K F FSK+P C+KDI+FWIN F N+ E++R + D+ E V LID
Sbjct: 322 RFSKQFLPNKISTFKPFSKYPACFKDIAFWINNDFNPNDFYEIIRDVCQDMVESVNLIDQ 381
Query: 436 FSPKKGMTSPCYRIAYRSMERSLTDDEINDLQWKVREQVQSKLEVVIR 293
++ K G TS CYR+ YRSMERSL ++EI+ LQ K+R +V + L V +R
Sbjct: 382 YTAKSGKTSLCYRVNYRSMERSLRNEEIDKLQEKLRNRVANSLRVELR 429
>gb|AAO51910.1| similar to Arabidopsis thaliana (Mouse-ear cress).
Phenylalanine-tRNA synthetase-like protein
[Dictyostelium discoideum]
Length = 454
Score = 107 bits (267), Expect = 1e-22
Identities = 53/101 (52%), Positives = 73/101 (71%), Gaps = 3/101 (2%)
Frame = -2
Query: 586 GVKFNHFSKFPPCYKDISFWIN--ESFTENNLCEVVRGIAGDLAEEVQLIDNFSPKK-GM 416
GV+F FSK+P C+KD+SFW+ E+F EN E VR GDL E V L+DNF+ KK
Sbjct: 354 GVQFQQFSKYPSCFKDVSFWLEDEENFHENKFYEFVRESCGDLVERVDLVDNFTNKKLNK 413
Query: 415 TSPCYRIAYRSMERSLTDDEINDLQWKVREQVQSKLEVVIR 293
TS CYRI YRSM+R+LT++EI+ LQ+ +RE++++ L V +R
Sbjct: 414 TSHCYRIYYRSMDRNLTNEEIDILQFNLREKLENHLSVKLR 454
>gb|AAF79201.1| phenylalanyl-tRNA synthetase alpha subunit-like protein [Emericella
nidulans]
Length = 436
Score = 100 bits (248), Expect = 2e-20
Identities = 54/120 (45%), Positives = 77/120 (64%), Gaps = 14/120 (11%)
Frame = -2
Query: 610 SQFSKVHLGVKFNHFSKFPPCYKDISFWINESFT-------------ENNLCEVVRGIAG 470
SQF + +F FSK+P CYKD++FW+ + T EN++ E+VRG+ G
Sbjct: 318 SQFKAGQI-TRFEPFSKYPACYKDVAFWLPSAATSGGSAAGGAVPVHENDIMEIVRGVGG 376
Query: 469 DLAEEVQLIDNF-SPKKGMTSPCYRIAYRSMERSLTDDEINDLQWKVREQVQSKLEVVIR 293
+L E+V+LID F PK S CYRI YRS+ER+LT++E NDL KVR+++ S+L V +R
Sbjct: 377 NLVEDVKLIDEFIHPKTNRKSLCYRINYRSLERTLTNEETNDLHDKVRQKLVSQLCVELR 436
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 525,197,828
Number of Sequences: 1393205
Number of extensions: 11024016
Number of successful extensions: 27881
Number of sequences better than 10.0: 105
Number of HSP's better than 10.0 without gapping: 26911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27819
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24568846532
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
