Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014351A_C01 KMC014351A_c01
(548 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_189092.1| hypothetical protein; protein id: At3g24490.1 [... 80 2e-14
dbj|BAB68057.1| P0480C01.17 [Oryza sativa (japonica cultivar-gro... 64 2e-09
ref|NP_188034.1| hypothetical protein; protein id: At3g14180.1, ... 52 6e-06
dbj|BAB83610.1| 6b-interacting protein 1 [Nicotiana tabacum] 51 1e-05
ref|NP_568158.1| putative protein; protein id: At5g05550.1, supp... 50 2e-05
>ref|NP_189092.1| hypothetical protein; protein id: At3g24490.1 [Arabidopsis
thaliana] gi|9294038|dbj|BAB01995.1|
gene_id:MOB24.1~unknown protein [Arabidopsis thaliana]
Length = 333
Score = 79.7 bits (195), Expect = 2e-14
Identities = 36/65 (55%), Positives = 53/65 (81%)
Frame = -3
Query: 546 FGKIYEKIENTKRQQMMELEKMRLDFNRELELQKKQILERAEAEIAKMQEVDEDETDSST 367
FGK+YEK+E +K++QM ELEKMR DF R+LELQKKQI++RA++EIA+++E +E+
Sbjct: 254 FGKVYEKMEKSKKEQMKELEKMRADFQRDLELQKKQIVDRAQSEIARLREEEENHHGGGD 313
Query: 366 ENLSE 352
++ SE
Sbjct: 314 DDESE 318
>dbj|BAB68057.1| P0480C01.17 [Oryza sativa (japonica cultivar-group)]
Length = 351
Score = 63.5 bits (153), Expect = 2e-09
Identities = 27/56 (48%), Positives = 45/56 (80%)
Frame = -3
Query: 543 GKIYEKIENTKRQQMMELEKMRLDFNRELELQKKQILERAEAEIAKMQEVDEDETD 376
G +YE++E++KRQ M E+E +R D R+LE+++++ILE+A+AEIA++ E D +E D
Sbjct: 276 GDVYERVESSKRQHMAEVEWLRRDLQRDLEVRRREILEKAQAEIARLTEEDGEEGD 331
>ref|NP_188034.1| hypothetical protein; protein id: At3g14180.1, supported by cDNA:
gi_18176239, supported by cDNA: gi_21281262 [Arabidopsis
thaliana] gi|9294645|dbj|BAB02984.1| contains similarity
to DNA-binding protein~gene_id:MAG2.16 [Arabidopsis
thaliana] gi|18176240|gb|AAL60009.1| unknown protein
[Arabidopsis thaliana] gi|21281263|gb|AAM44901.1|
unknown protein [Arabidopsis thaliana]
Length = 443
Score = 51.6 bits (122), Expect = 6e-06
Identities = 22/50 (44%), Positives = 37/50 (74%)
Frame = -3
Query: 546 FGKIYEKIENTKRQQMMELEKMRLDFNRELELQKKQILERAEAEIAKMQE 397
FG+ YE+ EN K QQ++E+EK R+ F +ELELQ+ Q + + EI+++++
Sbjct: 360 FGEAYEQTENAKLQQVVEMEKERMKFLKELELQRMQFFVKTQLEISQLKQ 409
>dbj|BAB83610.1| 6b-interacting protein 1 [Nicotiana tabacum]
Length = 318
Score = 50.8 bits (120), Expect = 1e-05
Identities = 18/49 (36%), Positives = 39/49 (78%)
Frame = -3
Query: 546 FGKIYEKIENTKRQQMMELEKMRLDFNRELELQKKQILERAEAEIAKMQ 400
F +IYE++E+ K++QM+ELEK R+ F ++LE+Q+ +++ ++ ++ K++
Sbjct: 260 FAEIYERVEDAKQRQMVELEKQRMQFAKDLEIQRMKLIMESQVQLEKLK 308
>ref|NP_568158.1| putative protein; protein id: At5g05550.1, supported by cDNA:
gi_15010667, supported by cDNA: gi_16974318 [Arabidopsis
thaliana] gi|15010668|gb|AAK73993.1| AT5g05550/MOP10_9
[Arabidopsis thaliana] gi|16974319|gb|AAL31144.1|
AT5g05550/MOP10_9 [Arabidopsis thaliana]
Length = 246
Score = 49.7 bits (117), Expect = 2e-05
Identities = 21/47 (44%), Positives = 34/47 (71%)
Frame = -3
Query: 546 FGKIYEKIENTKRQQMMELEKMRLDFNRELELQKKQILERAEAEIAK 406
FG++YE+IE K+Q M+ELEK R++ +E+EL++ +L + EI K
Sbjct: 186 FGEVYERIEGKKQQMMIELEKQRMEVTKEVELKRMNMLMEMQLEIEK 232
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 456,019,356
Number of Sequences: 1393205
Number of extensions: 9780775
Number of successful extensions: 43843
Number of sequences better than 10.0: 117
Number of HSP's better than 10.0 without gapping: 35391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41984
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18947112822
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
