Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014347A_C01 KMC014347A_c01
(435 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T52072 hypothetical protein g5bf [imported] - Arabidopsis t... 207 3e-53
ref|NP_172405.1| putative RNA-binding protein; protein id: At1g0... 207 3e-53
gb|AAM65150.1| putative RNA-binding protein [Arabidopsis thaliana] 207 3e-53
gb|AAL32648.1| g5bf protein [Arabidopsis thaliana] 207 3e-53
pir||T51863 probable RNA binding protein [imported] - Arabidopsi... 202 8e-52
>pir||T52072 hypothetical protein g5bf [imported] - Arabidopsis thaliana
gi|2765081|emb|CAA71589.1| g5bf [Arabidopsis thaliana]
Length = 378
Score = 207 bits (526), Expect = 3e-53
Identities = 104/136 (76%), Positives = 120/136 (87%), Gaps = 1/136 (0%)
Frame = +2
Query: 29 MARLVVPQQNQLSFSTLAPSLSDFSGTRLQTQIQFRRKAWQPKG-FHVSASSTKKILIMG 205
MA++++ QQ+Q SFS L SLSDF+G +L Q+Q++RK QPKG +VSASS KKILIMG
Sbjct: 1 MAKMMMLQQHQPSFSLLTSSLSDFNGAKLHLQVQYKRKVHQPKGALYVSASSEKKILIMG 60
Query: 206 GTRFIGVFLSRLLVKEGHQVTLFTRGKAPITQQLPGESDSDFSDFSSKIKHLKGDRKDYD 385
GTRFIG+FLSR+LVKEGHQVTLFTRGK+PI +QLPGESD DF+DFSSKI HLKGDRKDYD
Sbjct: 61 GTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDYD 120
Query: 386 FVKSSLSAEGFDVVYD 433
FVKSSLSAEGFDVVYD
Sbjct: 121 FVKSSLSAEGFDVVYD 136
>ref|NP_172405.1| putative RNA-binding protein; protein id: At1g09340.1, supported by
cDNA: 37028., supported by cDNA: gi_13358232, supported
by cDNA: gi_14334753, supported by cDNA: gi_16226246,
supported by cDNA: gi_17064987, supported by cDNA:
gi_17979098 [Arabidopsis thaliana]
gi|25402537|pir||E86226 hypothetical protein [imported]
- Arabidopsis thaliana gi|4337177|gb|AAD18098.1|
Identical to gb|Y10557 g5bf gene from Arabidopsis
thaliana. ESTs gb|R30578, gb|R90475, gb|T22384,
gb|T22425, gb|N64934 and gb|T46767 come from this gene
gi|11762234|gb|AAG40395.1|AF325043_1 At1g09340
[Arabidopsis thaliana] gi|14334754|gb|AAK59555.1|
putative RNA-binding protein [Arabidopsis thaliana]
gi|16226247|gb|AAL16114.1|AF428282_1 At1g09340/T31J12_6
[Arabidopsis thaliana] gi|17979099|gb|AAL47493.1|
putative RNA-binding protein [Arabidopsis thaliana]
Length = 378
Score = 207 bits (526), Expect = 3e-53
Identities = 104/136 (76%), Positives = 120/136 (87%), Gaps = 1/136 (0%)
Frame = +2
Query: 29 MARLVVPQQNQLSFSTLAPSLSDFSGTRLQTQIQFRRKAWQPKG-FHVSASSTKKILIMG 205
MA++++ QQ+Q SFS L SLSDF+G +L Q+Q++RK QPKG +VSASS KKILIMG
Sbjct: 1 MAKMMMLQQHQPSFSLLTSSLSDFNGAKLHLQVQYKRKVHQPKGALYVSASSEKKILIMG 60
Query: 206 GTRFIGVFLSRLLVKEGHQVTLFTRGKAPITQQLPGESDSDFSDFSSKIKHLKGDRKDYD 385
GTRFIG+FLSR+LVKEGHQVTLFTRGK+PI +QLPGESD DF+DFSSKI HLKGDRKDYD
Sbjct: 61 GTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDYD 120
Query: 386 FVKSSLSAEGFDVVYD 433
FVKSSLSAEGFDVVYD
Sbjct: 121 FVKSSLSAEGFDVVYD 136
>gb|AAM65150.1| putative RNA-binding protein [Arabidopsis thaliana]
Length = 378
Score = 207 bits (526), Expect = 3e-53
Identities = 104/136 (76%), Positives = 120/136 (87%), Gaps = 1/136 (0%)
Frame = +2
Query: 29 MARLVVPQQNQLSFSTLAPSLSDFSGTRLQTQIQFRRKAWQPKG-FHVSASSTKKILIMG 205
MA++++ QQ+Q SFS L SLSDF+G +L Q+Q++RK QPKG +VSASS KKILIMG
Sbjct: 1 MAKMMMLQQHQPSFSLLTSSLSDFNGAKLHLQVQYKRKVHQPKGALYVSASSEKKILIMG 60
Query: 206 GTRFIGVFLSRLLVKEGHQVTLFTRGKAPITQQLPGESDSDFSDFSSKIKHLKGDRKDYD 385
GTRFIG+FLSR+LVKEGHQVTLFTRGK+PI +QLPGESD DF+DFSSKI HLKGDRKDYD
Sbjct: 61 GTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDYD 120
Query: 386 FVKSSLSAEGFDVVYD 433
FVKSSLSAEGFDVVYD
Sbjct: 121 FVKSSLSAEGFDVVYD 136
>gb|AAL32648.1| g5bf protein [Arabidopsis thaliana]
Length = 378
Score = 207 bits (526), Expect = 3e-53
Identities = 104/136 (76%), Positives = 120/136 (87%), Gaps = 1/136 (0%)
Frame = +2
Query: 29 MARLVVPQQNQLSFSTLAPSLSDFSGTRLQTQIQFRRKAWQPKG-FHVSASSTKKILIMG 205
MA++++ QQ+Q SFS L SLSDF+G +L Q+Q++RK QPKG +VSASS KKILIMG
Sbjct: 1 MAKMMMLQQHQPSFSLLTSSLSDFNGAKLHLQVQYKRKVHQPKGALYVSASSEKKILIMG 60
Query: 206 GTRFIGVFLSRLLVKEGHQVTLFTRGKAPITQQLPGESDSDFSDFSSKIKHLKGDRKDYD 385
GTRFIG+FLSR+LVKEGHQVTLFTRGK+PI +QLPGESD DF+DFSSKI HLKGDRKDYD
Sbjct: 61 GTRFIGLFLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDYD 120
Query: 386 FVKSSLSAEGFDVVYD 433
FVKSSLSAEGFDVVYD
Sbjct: 121 FVKSSLSAEGFDVVYD 136
>pir||T51863 probable RNA binding protein [imported] - Arabidopsis thaliana
gi|3850621|emb|CAA75602.1| putative RNA binding protein
[Arabidopsis thaliana]
Length = 374
Score = 202 bits (514), Expect = 8e-52
Identities = 102/129 (79%), Positives = 114/129 (88%), Gaps = 1/129 (0%)
Frame = +2
Query: 50 QQNQLSFSTLAPSLSDFSGTRLQTQIQFRRKAWQPKG-FHVSASSTKKILIMGGTRFIGV 226
QQ+Q SFS L SLSDF+G +L Q+Q++RK QPKG +VSASS KKILIMGGTRFIG+
Sbjct: 4 QQHQPSFSLLTSSLSDFNGAKLHLQVQYKRKVHQPKGALYVSASSEKKILIMGGTRFIGL 63
Query: 227 FLSRLLVKEGHQVTLFTRGKAPITQQLPGESDSDFSDFSSKIKHLKGDRKDYDFVKSSLS 406
FLSR+LVKEGHQVTLFTRGK+PI +QLPGESD DF+DFSSKI HLKGDRKDYDFVKSSLS
Sbjct: 64 FLSRILVKEGHQVTLFTRGKSPIAKQLPGESDQDFADFSSKILHLKGDRKDYDFVKSSLS 123
Query: 407 AEGFDVVYD 433
AEGFDVVYD
Sbjct: 124 AEGFDVVYD 132
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 368,257,959
Number of Sequences: 1393205
Number of extensions: 7262129
Number of successful extensions: 20428
Number of sequences better than 10.0: 320
Number of HSP's better than 10.0 without gapping: 20081
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20408
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 6756111528
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
