Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014333A_C01 KMC014333A_c01
(286 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|EAA22048.1| hypothetical protein [Plasmodium yoelii yoelii] 32 2.2
ref|NP_196748.1| putative protein; protein id: At5g11870.1 [Arab... 32 2.9
emb|CAD40784.1| OSJNBb0012E08.8 [Oryza sativa (japonica cultivar... 31 3.8
gb|AAA18579.1| 28 kDa protein [Oxytricha fallax] gi|685195|gb|AA... 31 3.8
ref|NP_612149.1| ataxia telangiectasia mutated protein isoform 2... 31 5.0
>gb|EAA22048.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 920
Score = 32.0 bits (71), Expect = 2.2
Identities = 19/52 (36%), Positives = 26/52 (49%), Gaps = 3/52 (5%)
Frame = +2
Query: 131 LPIETQPIAVKNIHIFLHCLTRIKK---QKKKEITILYR*IKSYSEV*RNIN 277
LP+E I ++NI+ HCL +K +K I +K Y V RNIN
Sbjct: 17 LPLEKTEIIIENIYNLKHCLNLYRKELQEKNNYIDNANEDLKFYKSVLRNIN 68
>ref|NP_196748.1| putative protein; protein id: At5g11870.1 [Arabidopsis thaliana]
gi|11283467|pir||T48546 hypothetical protein F14F18.40 -
Arabidopsis thaliana gi|7573354|emb|CAB87660.1| putative
protein [Arabidopsis thaliana]
Length = 262
Score = 31.6 bits (70), Expect = 2.9
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -1
Query: 217 LFLLFFNSCKAVQKYMYIFYSNRLCLNWQLSPC 119
L LL F SC +V Y +F RLC+ +QL PC
Sbjct: 153 LILLLFISCLSVA-YARVFNDLRLCMTFQLIPC 184
>emb|CAD40784.1| OSJNBb0012E08.8 [Oryza sativa (japonica cultivar-group)]
Length = 508
Score = 31.2 bits (69), Expect = 3.8
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 70 NFHLSHSFQEQPLKHHGKVKVAN*DTTYCCKKYTY 174
+F S S Q PL G++ + DTTYC KY +
Sbjct: 266 DFRASKSMQLYPLLQRGQINLLYLDTTYCNPKYKF 300
>gb|AAA18579.1| 28 kDa protein [Oxytricha fallax] gi|685195|gb|AAB42030.1| 28 kDa
protein [Oxytricha fallax]
Length = 234
Score = 31.2 bits (69), Expect = 3.8
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = -1
Query: 157 SNRLCLN---WQLSPCHGVSMVVLETSVINENFFVSMVV 50
SNRLC + W+L+ H S+V E S I ++FF+ +V
Sbjct: 189 SNRLCRDLQLWKLAVKHSSSLVEREVSPILQSFFIDKIV 227
>ref|NP_612149.1| ataxia telangiectasia mutated protein isoform 2; AT protein; AT
mutated; human phosphatidylinositol 3-kinase homolog;
serine-protein kinase ATM; AT complementation group A; AT
complementation group C; AT complementation group D; AT
complementation group E [Homo sapiens]
Length = 1708
Score = 30.8 bits (68), Expect = 5.0
Identities = 16/46 (34%), Positives = 26/46 (55%)
Frame = +3
Query: 138 LRHNLLL*KIYIYFCTALQELKNKRKRKLQYCTDKLNPIVRFKGIL 275
LR + ++ +++ T LQ RKRKL CT K+ P+ + G+L
Sbjct: 1374 LRQDAVMQQVFQMCNTLLQRNTETRKRKLTICTYKVVPLSQRSGVL 1419
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 237,866,201
Number of Sequences: 1393205
Number of extensions: 4819138
Number of successful extensions: 12117
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 11674
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12099
length of database: 448,689,247
effective HSP length: 70
effective length of database: 351,164,897
effective search space used: 8427957528
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
