Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014322A_C01 KMC014322A_c01
(504 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H86260 protein T12C24.30 [imported] - Arabidopsis thaliana ... 127 5e-29
gb|AAL32696.1| similar to ATP-dependent RNA helicase [Arabidopsi... 127 5e-29
gb|AAF78481.1|AC012187_1 Contains similarity to DEAD box RNA hel... 127 5e-29
ref|NP_172737.1| unknown protein; protein id: At1g12770.1 [Arabi... 127 5e-29
ref|NP_172729.1| hypothetical protein [Arabidopsis thaliana] 69 2e-11
>pir||H86260 protein T12C24.30 [imported] - Arabidopsis thaliana
gi|12056979|gb|AAF88089.2|AC025417_17 T12C24.30
[Arabidopsis thaliana]
Length = 551
Score = 127 bits (320), Expect = 5e-29
Identities = 56/78 (71%), Positives = 70/78 (88%)
Frame = -2
Query: 503 DVAECDLVVNLELPTDSIHYAHRAGRTGRLGRNGTVLTICEEPEVFVVKKLQKQLGIPIP 324
DVAECDLVVNLELPTD++HYAHRAGRTGRLGR GTV+T+CEE +VF+VKK++KQLG+P
Sbjct: 472 DVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVVTVCEESQVFIVKKMEKQLGLPFL 531
Query: 323 CCDITEGKLVVTEEEKVL 270
C+ +G+LVVTEE+K +
Sbjct: 532 YCEFVDGELVVTEEDKAI 549
>gb|AAL32696.1| similar to ATP-dependent RNA helicase [Arabidopsis thaliana]
gi|21387213|gb|AAM48010.1| ATP-dependent RNA
helicase-like protein [Arabidopsis thaliana]
Length = 551
Score = 127 bits (320), Expect = 5e-29
Identities = 56/78 (71%), Positives = 70/78 (88%)
Frame = -2
Query: 503 DVAECDLVVNLELPTDSIHYAHRAGRTGRLGRNGTVLTICEEPEVFVVKKLQKQLGIPIP 324
DVAECDLVVNLELPTD++HYAHRAGRTGRLGR GTV+T+CEE +VF+VKK++KQLG+P
Sbjct: 472 DVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVVTVCEESQVFIVKKMEKQLGLPFL 531
Query: 323 CCDITEGKLVVTEEEKVL 270
C+ +G+LVVTEE+K +
Sbjct: 532 YCEFVDGELVVTEEDKAI 549
>gb|AAF78481.1|AC012187_1 Contains similarity to DEAD box RNA helicase (RH9) from Arabidopsis
thaliana gb|AJ010461 and contains a Helicase PF|00271
domain. EST gb|AI997215 comes from this gene. This
gene may be cut off
Length = 115
Score = 127 bits (320), Expect = 5e-29
Identities = 56/78 (71%), Positives = 70/78 (88%)
Frame = -2
Query: 503 DVAECDLVVNLELPTDSIHYAHRAGRTGRLGRNGTVLTICEEPEVFVVKKLQKQLGIPIP 324
DVAECDLVVNLELPTD++HYAHRAGRTGRLGR GTV+T+CEE +VF+VKK++KQLG+P
Sbjct: 36 DVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVVTVCEESQVFIVKKMEKQLGLPFL 95
Query: 323 CCDITEGKLVVTEEEKVL 270
C+ +G+LVVTEE+K +
Sbjct: 96 YCEFVDGELVVTEEDKAI 113
>ref|NP_172737.1| unknown protein; protein id: At1g12770.1 [Arabidopsis thaliana]
Length = 1145
Score = 127 bits (320), Expect = 5e-29
Identities = 56/78 (71%), Positives = 70/78 (88%)
Frame = -2
Query: 503 DVAECDLVVNLELPTDSIHYAHRAGRTGRLGRNGTVLTICEEPEVFVVKKLQKQLGIPIP 324
DVAECDLVVNLELPTD++HYAHRAGRTGRLGR GTV+T+CEE +VF+VKK++KQLG+P
Sbjct: 472 DVAECDLVVNLELPTDAVHYAHRAGRTGRLGRKGTVVTVCEESQVFIVKKMEKQLGLPFL 531
Query: 323 CCDITEGKLVVTEEEKVL 270
C+ +G+LVVTEE+K +
Sbjct: 532 YCEFVDGELVVTEEDKAI 549
>ref|NP_172729.1| hypothetical protein [Arabidopsis thaliana]
Length = 195
Score = 69.3 bits (168), Expect = 2e-11
Identities = 33/55 (60%), Positives = 41/55 (74%)
Frame = -2
Query: 497 AECDLVVNLELPTDSIHYAHRAGRTGRLGRNGTVLTICEEPEVFVVKKLQKQLGI 333
AECDL+V+LELPTD++HYAHRAGR R GR TV+T+CEE + + K Q GI
Sbjct: 43 AECDLMVDLELPTDAVHYAHRAGRMRRPGRKMTVVTVCEESQAEELHKEMIQRGI 97
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 410,435,805
Number of Sequences: 1393205
Number of extensions: 8293823
Number of successful extensions: 22561
Number of sequences better than 10.0: 1239
Number of HSP's better than 10.0 without gapping: 21837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22508
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15362785481
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
