Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014318A_C01 KMC014318A_c01
(600 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176107.1| auxin-induced basic helix-loop-helix transcript... 62 6e-09
gb|AAL96744.2|AC115684_3 similar to Dictyostelium discoideum (Sl... 46 3e-04
ref|NP_704767.1| hypothetical protein [Plasmodium falciparum 3D7... 44 0.001
gb|AAO52003.1| similar to Dictyostelium discoideum (Slime mold).... 43 0.003
gb|AAL92214.2| similar to Dictyostelium discoideum (Slime mold).... 42 0.006
>ref|NP_176107.1| auxin-induced basic helix-loop-helix transcription factor,
putative; protein id: At1g58100.1, supported by cDNA:
gi_19698994 [Arabidopsis thaliana]
gi|25404188|pir||C96614 hypothetical protein T18I24.2
[imported] - Arabidopsis thaliana
gi|12321250|gb|AAG50694.1|AC079604_1 auxin-induced basic
helix-loop-helix transcription factor, putative
[Arabidopsis thaliana]
gi|12321381|gb|AAG50759.1|AC079131_4 auxin-induced basic
helix-loop-helix transcription factor, putative
[Arabidopsis thaliana] gi|19698995|gb|AAL91233.1|
auxin-induced basic helix-loop-helix transcription
factor, putative [Arabidopsis thaliana]
Length = 401
Score = 62.0 bits (149), Expect = 6e-09
Identities = 43/89 (48%), Positives = 56/89 (62%), Gaps = 3/89 (3%)
Frame = -1
Query: 600 RSSGLQLGS-MYQP-PSQHLGLAMSDSNLGMLAALN-AYSNNNNNNRGFNVNSDHQTQNH 430
R S LQLGS + QP P+Q+LGL+M DSNLGMLAALN AYS RG N N++ + N
Sbjct: 322 RGSPLQLGSFLAQPQPTQNLGLSMPDSNLGMLAALNSAYS------RGGNANANAEQAN- 374
Query: 429 HHHSLEHQHQAQPQPTTDSGGEDGPNSSQ 343
+++EHQ + Q D E+ NSS+
Sbjct: 375 --NAVEHQEKQQQSDHDDDSREENSNSSE 401
>gb|AAL96744.2|AC115684_3 similar to Dictyostelium discoideum (Slime mold).
Homeobox-containing protein (Fragment)
Length = 1723
Score = 46.2 bits (108), Expect = 3e-04
Identities = 20/41 (48%), Positives = 26/41 (62%)
Frame = -1
Query: 501 NAYSNNNNNNRGFNVNSDHQTQNHHHHSLEHQHQAQPQPTT 379
N +NNNNNN N N+++ N+HHH H HQ Q QPT+
Sbjct: 190 NNNNNNNNNNNNSNNNNNNNNNNNHHH---HHHQQQSQPTS 227
Score = 42.7 bits (99), Expect = 0.004
Identities = 18/50 (36%), Positives = 29/50 (58%)
Frame = -1
Query: 501 NAYSNNNNNNRGFNVNSDHQTQNHHHHSLEHQHQAQPQPTTDSGGEDGPN 352
N +NNNNNN + N+++ N++HH HQ Q+QP ++ + PN
Sbjct: 189 NNNNNNNNNNNNNSNNNNNNNNNNNHHHHHHQQQSQPTSPYNNPIQHNPN 238
Score = 35.4 bits (80), Expect = 0.56
Identities = 14/61 (22%), Positives = 32/61 (51%)
Frame = -1
Query: 507 ALNAYSNNNNNNRGFNVNSDHQTQNHHHHSLEHQHQAQPQPTTDSGGEDGPNSSQ*LPQA 328
+ ++Y+NNNNNN N NS++ N+++++ + + ++ N++ Q+
Sbjct: 296 SFSSYNNNNNNNNNNNSNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNSNNNNNNQFSQS 355
Query: 327 Y 325
Y
Sbjct: 356 Y 356
>ref|NP_704767.1| hypothetical protein [Plasmodium falciparum 3D7]
gi|23505128|emb|CAD51910.1| hypothetical protein
[Plasmodium falciparum 3D7]
Length = 4202
Score = 44.3 bits (103), Expect = 0.001
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = -1
Query: 501 NAYSNNNNNNRGFNVNSDHQTQNHHHHSLEHQH 403
N++ NNNNN+ N N H NHHHH+ H H
Sbjct: 1853 NSHHNNNNNHHHHNNNHHHHNNNHHHHNNNHHH 1885
Score = 40.4 bits (93), Expect = 0.018
Identities = 20/56 (35%), Positives = 25/56 (43%), Gaps = 11/56 (19%)
Frame = -1
Query: 537 MSDSNLGMLAALNAYSNNNNNNRGF-----------NVNSDHQTQNHHHHSLEHQH 403
MSD ++N+ +NNNNNN N N H NHHHH+ H H
Sbjct: 1823 MSDDKCVNNISVNSNNNNNNNNNNHHHHNNNSHHNNNNNHHHHNNNHHHHNNNHHH 1878
Score = 34.3 bits (77), Expect = 1.3
Identities = 12/28 (42%), Positives = 17/28 (59%)
Frame = -1
Query: 501 NAYSNNNNNNRGFNVNSDHQTQNHHHHS 418
N + ++NNN+ N N H NHHHH+
Sbjct: 1860 NNHHHHNNNHHHHNNNHHHHNNNHHHHN 1887
Score = 34.3 bits (77), Expect = 1.3
Identities = 17/51 (33%), Positives = 23/51 (44%), Gaps = 9/51 (17%)
Frame = -1
Query: 528 SNLGMLAALNAYSNNNNNNRGFNVNSDH---------QTQNHHHHSLEHQH 403
+N+ +N S N+NNN N N+ H NHHHH+ H H
Sbjct: 1821 NNMSDDKCVNNISVNSNNNNNNNNNNHHHHNNNSHHNNNNNHHHHNNNHHH 1871
>gb|AAO52003.1| similar to Dictyostelium discoideum (Slime mold). Protein kinase
YakA
Length = 1338
Score = 43.1 bits (100), Expect = 0.003
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = -1
Query: 501 NAYSNNNNNNRGFNVNSDHQTQNHHHHSLEHQHQAQP 391
N +NNNNNN N N+++ +HHHH + +H +QP
Sbjct: 213 NNNNNNNNNNNNNNNNNNNHHNHHHHHHRKEEHHSQP 249
Score = 41.6 bits (96), Expect = 0.008
Identities = 20/47 (42%), Positives = 26/47 (54%)
Frame = -1
Query: 501 NAYSNNNNNNRGFNVNSDHQTQNHHHHSLEHQHQAQPQPTTDSGGED 361
N +NNNNNN N N++H +HHHH E H QPT + E+
Sbjct: 215 NNNNNNNNNNNN-NNNNNHHNHHHHHHRKEEHHS---QPTIEEEEEE 257
>gb|AAL92214.2| similar to Dictyostelium discoideum (Slime mold). Prespore-specific
protein (Fragment)
Length = 652
Score = 42.0 bits (97), Expect = 0.006
Identities = 22/63 (34%), Positives = 30/63 (46%), Gaps = 2/63 (3%)
Frame = -1
Query: 567 QPPSQHLGLAMSDSNLGMLAALN--AYSNNNNNNRGFNVNSDHQTQNHHHHSLEHQHQAQ 394
Q PS + + + N + N A++NNNNNN G + HQ H L+ Q Q Q
Sbjct: 537 QEPSSNCNIISTPINNQEVIGYNSGAFNNNNNNNNGDGITHHHQQYQLHPQQLQQQQQQQ 596
Query: 393 PQP 385
QP
Sbjct: 597 QQP 599
Score = 34.3 bits (77), Expect = 1.3
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = -1
Query: 501 NAYSNNNNNNRGFNVNSDHQTQNHHHHSLEHQHQAQPQPTTDS-GGEDGPNSSQ*LPQAY 325
N +NNNNNN FN N+ + N + ++ + + +S G + NS+Q P +Y
Sbjct: 441 NNNNNNNNNNNNFNNNNSNNNNNSNINNSNNNNSNNTYNGNNSFGNNNSANSNQYSPSSY 500
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 551,575,803
Number of Sequences: 1393205
Number of extensions: 12538742
Number of successful extensions: 147995
Number of sequences better than 10.0: 626
Number of HSP's better than 10.0 without gapping: 63609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104056
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
