Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014314A_C01 KMC014314A_c01
(608 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC07324.1| putative male sterility 1 protein [Oryza sativa ... 132 3e-30
ref|NP_564424.1| expressed protein; protein id: At1g33420.1, sup... 119 2e-26
ref|NP_176791.1| PHD-finger protein, putative; protein id: At1g6... 88 8e-17
gb|AAL58226.1|AC090882_29 putative collagen [Oryza sativa (japon... 87 2e-16
ref|NP_178290.1| hypothetical protein; protein id: At2g01810.1 [... 86 5e-16
>dbj|BAC07324.1| putative male sterility 1 protein [Oryza sativa (japonica
cultivar-group)]
Length = 716
Score = 132 bits (333), Expect = 3e-30
Identities = 65/126 (51%), Positives = 82/126 (64%), Gaps = 16/126 (12%)
Frame = -1
Query: 605 LLGSKDVVCVRGRCIGKNG-LGKFRMERGLERWTVECSCGAKDDDGERMMACDFCGVWRH 429
+LGS +V VRGRC G N + +FRMERGLE WTV+C+CGAKDDDGERM+ACD CGVW+H
Sbjct: 587 VLGSSQLVRVRGRCTGDNRRIVQFRMERGLENWTVDCTCGAKDDDGERMLACDVCGVWQH 646
Query: 428 TRCTGIQDTDPVPIRFVCQKCVN---------------SDSKPKPGGHCKDETVTNVSGS 294
TRC+GI D D VP +F+C+KC + S G CKDE ++V G+
Sbjct: 647 TRCSGISDFDDVPEKFICRKCASPRRGKGRGGGGGNGGSRMDVSAAGRCKDEIGSSVGGA 706
Query: 293 SSCFGK 276
FG+
Sbjct: 707 GK-FGR 711
>ref|NP_564424.1| expressed protein; protein id: At1g33420.1, supported by cDNA:
gi_14334761, supported by cDNA: gi_15293254 [Arabidopsis
thaliana] gi|25513750|pir||H86457 78.1K hypothetical
protein F10C21.9 - Arabidopsis thaliana
gi|12322372|gb|AAG51204.1|AC051630_1 hypothetical
protein; 47104-44821 [Arabidopsis thaliana]
gi|14334762|gb|AAK59559.1| unknown protein [Arabidopsis
thaliana] gi|15293255|gb|AAK93738.1| unknown protein
[Arabidopsis thaliana]
Length = 697
Score = 119 bits (299), Expect = 2e-26
Identities = 55/119 (46%), Positives = 76/119 (63%), Gaps = 14/119 (11%)
Frame = -1
Query: 605 LLGSKDVVCVRGRCIGKNGLGKFRMERGLERWTVECSCGAKDDDGERMMACDFCGVWRHT 426
L+G+ V+ ++GRC K+GL ++RMERG++ W V+C CG KDDDGERM+ACD CGVW HT
Sbjct: 572 LVGTNGVIRIKGRC-SKHGLLRYRMERGVDNWKVDCKCGTKDDDGERMLACDGCGVWHHT 630
Query: 425 RCTGIQDTDPVPIRFVCQKCVNSDSK--------------PKPGGHCKDETVTNVSGSS 291
RC GI + D +P +F+C +C+ SK PK G C+ E+ SGS+
Sbjct: 631 RCIGINNADALPSKFLCFRCIELYSKKPKQSKKERGSSQVPKAGFVCRGESAAMGSGSN 689
>ref|NP_176791.1| PHD-finger protein, putative; protein id: At1g66170.1 [Arabidopsis
thaliana] gi|25404593|pir||E96686 probable PHD-finger
protein F15E12.11 [imported] - Arabidopsis thaliana
gi|12322609|gb|AAG51303.1|AC026480_10 PHD-finger
protein, putative [Arabidopsis thaliana]
Length = 653
Score = 88.2 bits (217), Expect = 8e-17
Identities = 39/80 (48%), Positives = 51/80 (63%)
Frame = -1
Query: 605 LLGSKDVVCVRGRCIGKNGLGKFRMERGLERWTVECSCGAKDDDGERMMACDFCGVWRHT 426
L+GS + VRG I K + + G + W V+C C A+DDDGERM++CD C VW+HT
Sbjct: 525 LIGSCSALTVRGHGIDLES--KLKCQGGCDTWMVKCICRARDDDGERMISCDVCEVWQHT 582
Query: 425 RCTGIQDTDPVPIRFVCQKC 366
RC GI D+D +P FVC C
Sbjct: 583 RCCGIDDSDTLPPLFVCSNC 602
>gb|AAL58226.1|AC090882_29 putative collagen [Oryza sativa (japonica cultivar-group)]
gi|28301925|gb|AAO38818.1| hypothetical protein [Oryza
sativa (japonica cultivar-group)]
Length = 697
Score = 87.0 bits (214), Expect = 2e-16
Identities = 39/75 (52%), Positives = 48/75 (64%)
Frame = -1
Query: 590 DVVCVRGRCIGKNGLGKFRMERGLERWTVECSCGAKDDDGERMMACDFCGVWRHTRCTGI 411
D + V G G + + R GL+ W V C CGA+DDDGERM+ACD C VW HTRC GI
Sbjct: 613 DTISVYGN--GADMETELRCHGGLDLWEVRCVCGAQDDDGERMIACDACDVWHHTRCVGI 670
Query: 410 QDTDPVPIRFVCQKC 366
D++PVP F+C C
Sbjct: 671 ADSEPVPPLFLCVLC 685
>ref|NP_178290.1| hypothetical protein; protein id: At2g01810.1 [Arabidopsis
thaliana] gi|25410935|pir||D84429 hypothetical protein
At2g01810 [imported] - Arabidopsis thaliana
gi|4220491|gb|AAD12714.1| hypothetical protein
[Arabidopsis thaliana]
Length = 697
Score = 85.5 bits (210), Expect = 5e-16
Identities = 34/67 (50%), Positives = 43/67 (63%)
Frame = -1
Query: 542 KFRMERGLERWTVECSCGAKDDDGERMMACDFCGVWRHTRCTGIQDTDPVPIRFVCQKCV 363
+ R E G + WTV+C CGA+DDDGERM+ACD C VW HT C I+D + VP F+C C
Sbjct: 624 ELRYEGGFDDWTVDCKCGARDDDGERMVACDACKVWHHTLCNSIEDDEAVPSVFLCNMCY 683
Query: 362 NSDSKPK 342
+ K
Sbjct: 684 GDSLRSK 690
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 560,892,476
Number of Sequences: 1393205
Number of extensions: 12869826
Number of successful extensions: 39747
Number of sequences better than 10.0: 217
Number of HSP's better than 10.0 without gapping: 37649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39654
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
