Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014306A_C01 KMC014306A_c01
(540 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA95741.1| contains similarity to ankyrin like protein~gene... 107 7e-23
ref|NP_566724.1| auxin-regulated protein; protein id: At3g23280.... 107 7e-23
gb|AAM65682.1| unknown [Arabidopsis thaliana] 107 7e-23
ref|NP_683586.1| auxin-regulated protein; protein id: At3g23280.... 107 7e-23
dbj|BAC10202.1| contains ESTs AU055804(S20063),AU055998(S20213),... 105 5e-22
>dbj|BAA95741.1| contains similarity to ankyrin like protein~gene_id:K14B15.19
[Arabidopsis thaliana]
Length = 454
Score = 107 bits (268), Expect = 7e-23
Identities = 44/53 (83%), Positives = 48/53 (90%)
Frame = -3
Query: 517 TCVICLDAPAEGACIPCGHVAGCMSCLNEVKTKKWGCPVCRAKIDQVIKLYRV 359
TC ICLDAP+E C+PCGHVAGCMSCL E+K+K WGCPVCRAKIDQVIKLYRV
Sbjct: 402 TCAICLDAPSEAVCVPCGHVAGCMSCLKEIKSKNWGCPVCRAKIDQVIKLYRV 454
>ref|NP_566724.1| auxin-regulated protein; protein id: At3g23280.1, supported by
cDNA: 41648. [Arabidopsis thaliana]
Length = 462
Score = 107 bits (268), Expect = 7e-23
Identities = 44/53 (83%), Positives = 48/53 (90%)
Frame = -3
Query: 517 TCVICLDAPAEGACIPCGHVAGCMSCLNEVKTKKWGCPVCRAKIDQVIKLYRV 359
TC ICLDAP+E C+PCGHVAGCMSCL E+K+K WGCPVCRAKIDQVIKLYRV
Sbjct: 410 TCAICLDAPSEAVCVPCGHVAGCMSCLKEIKSKNWGCPVCRAKIDQVIKLYRV 462
>gb|AAM65682.1| unknown [Arabidopsis thaliana]
Length = 462
Score = 107 bits (268), Expect = 7e-23
Identities = 44/53 (83%), Positives = 48/53 (90%)
Frame = -3
Query: 517 TCVICLDAPAEGACIPCGHVAGCMSCLNEVKTKKWGCPVCRAKIDQVIKLYRV 359
TC ICLDAP+E C+PCGHVAGCMSCL E+K+K WGCPVCRAKIDQVIKLYRV
Sbjct: 410 TCAICLDAPSEAVCVPCGHVAGCMSCLKEIKSKNWGCPVCRAKIDQVIKLYRV 462
>ref|NP_683586.1| auxin-regulated protein; protein id: At3g23280.2, supported by
cDNA: gi_15010671, supported by cDNA: gi_16974316
[Arabidopsis thaliana] gi|15010672|gb|AAK73995.1|
AT3g23280/K14B15_17 [Arabidopsis thaliana]
gi|16974317|gb|AAL31143.1| AT3g23280/K14B15_17
[Arabidopsis thaliana]
Length = 438
Score = 107 bits (268), Expect = 7e-23
Identities = 44/53 (83%), Positives = 48/53 (90%)
Frame = -3
Query: 517 TCVICLDAPAEGACIPCGHVAGCMSCLNEVKTKKWGCPVCRAKIDQVIKLYRV 359
TC ICLDAP+E C+PCGHVAGCMSCL E+K+K WGCPVCRAKIDQVIKLYRV
Sbjct: 386 TCAICLDAPSEAVCVPCGHVAGCMSCLKEIKSKNWGCPVCRAKIDQVIKLYRV 438
>dbj|BAC10202.1| contains ESTs
AU055804(S20063),AU055998(S20213),
AU055803(S20063)~similar to ankyrin homolog [Oryza
sativa (japonica cultivar-group)]
Length = 489
Score = 105 bits (261), Expect = 5e-22
Identities = 41/53 (77%), Positives = 50/53 (93%)
Frame = -3
Query: 517 TCVICLDAPAEGACIPCGHVAGCMSCLNEVKTKKWGCPVCRAKIDQVIKLYRV 359
TCVICLDAP EGACIPCGH+AGCMSCL ++++KKWGCP+CRAKI+Q+I+LY V
Sbjct: 437 TCVICLDAPVEGACIPCGHMAGCMSCLKDIESKKWGCPICRAKINQIIRLYAV 489
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 472,022,791
Number of Sequences: 1393205
Number of extensions: 10086796
Number of successful extensions: 25651
Number of sequences better than 10.0: 746
Number of HSP's better than 10.0 without gapping: 24429
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25376
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 18462123008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
