Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014305A_C01 KMC014305A_c01
(665 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAA05172.1| hormone receptor 38 [Drosophila melanogaster] 35 1.2
sp|P49869|HR38_DROME Probable nuclear hormone receptor HR38 (dHR38) 35 1.2
ref|NP_477119.1| Hormone receptor-like in 38 CG1864-PB gi|729870... 35 1.2
sp|Q9TT90|ANDR_CANFA Androgen receptor (Dihydrotestosterone rece... 33 3.5
gb|ZP_00100581.1| hypothetical protein [Desulfitobacterium hafni... 33 4.5
>emb|CAA05172.1| hormone receptor 38 [Drosophila melanogaster]
Length = 1073
Score = 34.7 bits (78), Expect = 1.2
Identities = 22/62 (35%), Positives = 29/62 (46%)
Frame = +2
Query: 389 TIAEEQLFLDISEFTCLVSYASVFFETFQTAACGFHVQRQQQNL*MQHSANQNDQHQKNQ 568
+I E+QL + + CL+S S A H Q+QQQ Q Q QHQ+ Q
Sbjct: 409 SIPEQQLSSEQEQQLCLLSLRSS-----SDPAIALHAQQQQQQ--QQQQQQQQQQHQQQQ 461
Query: 569 QH 574
QH
Sbjct: 462 QH 463
>sp|P49869|HR38_DROME Probable nuclear hormone receptor HR38 (dHR38)
Length = 1073
Score = 34.7 bits (78), Expect = 1.2
Identities = 22/62 (35%), Positives = 29/62 (46%)
Frame = +2
Query: 389 TIAEEQLFLDISEFTCLVSYASVFFETFQTAACGFHVQRQQQNL*MQHSANQNDQHQKNQ 568
+I E+QL + + CL+S S A H Q+QQQ Q Q QHQ+ Q
Sbjct: 409 SIPEQQLSSEQEQQLCLLSLRSS-----SDPAIALHAQQQQQQ--QQQQQQQQQQHQQQQ 461
Query: 569 QH 574
QH
Sbjct: 462 QH 463
>ref|NP_477119.1| Hormone receptor-like in 38 CG1864-PB gi|7298701|gb|AAF53914.1|
CG1864-PB [Drosophila melanogaster]
Length = 1078
Score = 34.7 bits (78), Expect = 1.2
Identities = 22/62 (35%), Positives = 29/62 (46%)
Frame = +2
Query: 389 TIAEEQLFLDISEFTCLVSYASVFFETFQTAACGFHVQRQQQNL*MQHSANQNDQHQKNQ 568
+I E+QL + + CL+S S A H Q+QQQ Q Q QHQ+ Q
Sbjct: 409 SIPEQQLSSEQEQQLCLLSLRSS-----SDPAIALHAQQQQQQ--QQQQQQQQQQHQQQQ 461
Query: 569 QH 574
QH
Sbjct: 462 QH 463
>sp|Q9TT90|ANDR_CANFA Androgen receptor (Dihydrotestosterone receptor)
gi|6578767|gb|AAF18084.1|AF197950_1 androgen receptor
[Canis familiaris]
Length = 907
Score = 33.1 bits (74), Expect = 3.5
Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Frame = +2
Query: 464 ETFQTAACGFHVQRQQQNL*MQH-SANQNDQHQKNQQHDPES---GYT*YLTKSG*YSPN 631
E A G H+Q+QQQ Q S Q Q Q+ P++ G T YL P+
Sbjct: 43 EAVSAAPPGAHLQQQQQQQQQQETSPRQQQQQQQGDDGSPQAQSRGPTGYLALDEEQQPS 102
Query: 632 QWSSWRKNHP 661
Q S K HP
Sbjct: 103 QQRSASKGHP 112
>gb|ZP_00100581.1| hypothetical protein [Desulfitobacterium hafniense]
Length = 255
Score = 32.7 bits (73), Expect = 4.5
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Frame = -1
Query: 536 RSVASTGSAAASGRGIHRLLFERSRRR---RRHR 444
RS + G+ AA G G H+ L+ R RRR RRHR
Sbjct: 175 RSAVAPGAQAAGGPGFHQQLWRRRRRRAAVRRHR 208
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 565,558,867
Number of Sequences: 1393205
Number of extensions: 11792512
Number of successful extensions: 36025
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 32416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35656
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 28855580904
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
