Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014303A_C01 KMC014303A_c01
(507 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_174512.1| RING finger protein, putative; protein id: At1g... 106 2e-22
emb|CAC28847.2| related to HFB30 [Neurospora crassa] gi|28923041... 45 5e-04
pir||T25555 hypothetical protein C17H11.6 - Caenorhabditis elegans 44 0.001
ref|NP_509383.1| RING finger with In Between Ring fingers domain... 44 0.001
ref|NP_509382.1| RING finger with In Between Ring fingers domain... 44 0.001
>ref|NP_174512.1| RING finger protein, putative; protein id: At1g32340.1, supported
by cDNA: gi_20466164 [Arabidopsis thaliana]
gi|25518384|pir||B86448 hypothetical protein F5D14.10
[imported] - Arabidopsis thaliana
gi|8920608|gb|AAF81330.1|AC007767_10 Contains similarity
to ring finger protein 14 from Homo sapiens
gb|NM_004290. It contains an IBR domain PF|01485.
[Arabidopsis thaliana]
gi|12597865|gb|AAG60174.1|AC084110_7 hypothetical
protein [Arabidopsis thaliana]
gi|20466165|gb|AAM20400.1| RING finger protein, putative
[Arabidopsis thaliana] gi|25083846|gb|AAN72126.1| RING
finger protein, putative [Arabidopsis thaliana]
Length = 688
Score = 106 bits (264), Expect = 2e-22
Identities = 38/55 (69%), Positives = 48/55 (87%)
Frame = -1
Query: 507 GTACPSCRQFNAKIGNNNHMFCWACQSHYCYLCNEVVRRGTKHYGPKGCKQHSEG 343
G CP+CRQFN K GNNNH+FCWACQ+H+CYLC +VV++ +HYGPKGCKQH++G
Sbjct: 634 GQLCPNCRQFNGKAGNNNHLFCWACQAHFCYLCKKVVKKSAQHYGPKGCKQHTDG 688
Score = 42.0 bits (97), Expect = 0.004
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = -1
Query: 498 CPSCRQFNAKIGNNNHMFCWACQSHYCYLCNEVVRRGTKHYGPKGCK 358
CPSC+ ++ G N M C C ++CY CNE + G +H+ C+
Sbjct: 551 CPSCKIAISRTGGCNKMVCNNCGQYFCYRCNEAI-TGYEHFSEGKCE 596
>emb|CAC28847.2| related to HFB30 [Neurospora crassa] gi|28923041|gb|EAA32259.1|
hypothetical protein [Neurospora crassa]
Length = 781
Score = 45.1 bits (105), Expect = 5e-04
Identities = 16/33 (48%), Positives = 21/33 (63%)
Frame = -1
Query: 504 TACPSCRQFNAKIGNNNHMFCWACQSHYCYLCN 406
T CP+C K NHM C+ CQ+H+CYLC+
Sbjct: 433 TPCPTCAAPAQKTHGCNHMICYRCQTHFCYLCS 465
>pir||T25555 hypothetical protein C17H11.6 - Caenorhabditis elegans
Length = 816
Score = 43.5 bits (101), Expect = 0.001
Identities = 23/67 (34%), Positives = 35/67 (51%), Gaps = 3/67 (4%)
Frame = -1
Query: 501 ACPSCRQFNAKI--GNNNHMFCWACQSHYCYLCNEVVRRGTKHY-GPKGCKQHSEG*YTD 331
ACP C+ + K+ G+ NHM C C + +C+LC + + HY P GC + +T
Sbjct: 265 ACPRCKTYIVKMDDGSCNHMVCTMCNAEFCWLCLKEI--SDLHYLSPTGCTFWGKKPWTR 322
Query: 330 KYNALYQ 310
K L+Q
Sbjct: 323 KKKLLWQ 329
>ref|NP_509383.1| RING finger with In Between Ring fingers domain protein family
member [Caenorhabditis elegans]
gi|14573828|gb|AAK68189.1|U80847_6 Hypothetical protein
C17H11.6a [Caenorhabditis elegans]
Length = 793
Score = 43.5 bits (101), Expect = 0.001
Identities = 23/67 (34%), Positives = 35/67 (51%), Gaps = 3/67 (4%)
Frame = -1
Query: 501 ACPSCRQFNAKI--GNNNHMFCWACQSHYCYLCNEVVRRGTKHY-GPKGCKQHSEG*YTD 331
ACP C+ + K+ G+ NHM C C + +C+LC + + HY P GC + +T
Sbjct: 257 ACPRCKTYIVKMDDGSCNHMVCTMCNAEFCWLCLKEI--SDLHYLSPTGCTFWGKKPWTR 314
Query: 330 KYNALYQ 310
K L+Q
Sbjct: 315 KKKLLWQ 321
>ref|NP_509382.1| RING finger with In Between Ring fingers domain protein family
member [Caenorhabditis elegans]
gi|14573829|gb|AAK68190.1|U80847_7 Hypothetical protein
C17H11.6b [Caenorhabditis elegans]
Length = 796
Score = 43.5 bits (101), Expect = 0.001
Identities = 23/67 (34%), Positives = 35/67 (51%), Gaps = 3/67 (4%)
Frame = -1
Query: 501 ACPSCRQFNAKI--GNNNHMFCWACQSHYCYLCNEVVRRGTKHY-GPKGCKQHSEG*YTD 331
ACP C+ + K+ G+ NHM C C + +C+LC + + HY P GC + +T
Sbjct: 257 ACPRCKTYIVKMDDGSCNHMVCTMCNAEFCWLCLKEI--SDLHYLSPTGCTFWGKKPWTR 314
Query: 330 KYNALYQ 310
K L+Q
Sbjct: 315 KKKLLWQ 321
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 434,277,779
Number of Sequences: 1393205
Number of extensions: 9290325
Number of successful extensions: 24500
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 23888
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24461
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
