Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014301A_C01 KMC014301A_c01
(512 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_650912.1| CG15690-PA [Drosophila melanogaster] gi|7300656... 33 2.5
ref|NP_808286.1| hypothetical protein LOC216881 [Mus musculus] g... 31 7.4
ref|XP_203435.1| similar to GH10344p [Drosophila melanogaster] [... 31 9.6
>ref|NP_650912.1| CG15690-PA [Drosophila melanogaster] gi|7300656|gb|AAF55804.1|
CG15690-PA [Drosophila melanogaster]
Length = 136
Score = 32.7 bits (73), Expect = 2.5
Identities = 16/37 (43%), Positives = 21/37 (56%)
Frame = +2
Query: 20 HGSISTHQQRQGVYLHQQYLQ*QTSHGVSNLNLNHLQ 130
H + HQQ+Q HQQ+LQ Q H +L+ HLQ
Sbjct: 23 HQQLLHHQQQQHQQTHQQHLQQQYHHRQHSLHQQHLQ 59
>ref|NP_808286.1| hypothetical protein LOC216881 [Mus musculus]
gi|26339802|dbj|BAC33564.1| unnamed protein product [Mus
musculus]
Length = 216
Score = 31.2 bits (69), Expect = 7.4
Identities = 22/76 (28%), Positives = 35/76 (45%)
Frame = -3
Query: 324 LQRTQFLALACPRMEMKPGKIMVLKRSTSSRSFCYRSPYCLNLVPVGFFM*HAFYVLFVG 145
L+RTQFL L + G +++L+R+ + R+P L +PV + +G
Sbjct: 12 LRRTQFLLLFLTAAYLMTGSLLLLQRARVALPQALRAPSSLQALPVA--------TVALG 63
Query: 144 HGFFDWR*LRFRFETP 97
G D R LR +P
Sbjct: 64 VGLLDGRSLRDPHSSP 79
>ref|XP_203435.1| similar to GH10344p [Drosophila melanogaster] [Mus musculus]
gi|28981331|gb|AAH48831.1| Unknown (protein for
MGC:55022) [Mus musculus]
Length = 572
Score = 30.8 bits (68), Expect = 9.6
Identities = 22/76 (28%), Positives = 35/76 (45%)
Frame = -3
Query: 324 LQRTQFLALACPRMEMKPGKIMVLKRSTSSRSFCYRSPYCLNLVPVGFFM*HAFYVLFVG 145
L+RTQFL L + G +++L+R+ + R+P L +PV + +G
Sbjct: 12 LRRTQFLLLFLTAAYLMTGSLLLLQRARVALPQALRAPGSLQALPVA--------TVALG 63
Query: 144 HGFFDWR*LRFRFETP 97
G D R LR +P
Sbjct: 64 VGLLDGRSLRDPHSSP 79
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 428,640,227
Number of Sequences: 1393205
Number of extensions: 8800986
Number of successful extensions: 20767
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 20241
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20752
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 16232377112
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
