Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014292A_C01 KMC014292A_c01
(768 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAA97517.1| gene_id:F24B18.6~unknown protein [Arabidopsis th... 384 e-105
gb|AAO51446.1| similar to Arabidopsis thaliana (Mouse-ear cress)... 103 3e-21
gb|EAA30402.1| hypothetical protein [Neurospora crassa] 53 4e-06
gb|AAH46241.1| Similar to transmembrane protein 1 [Homo sapiens] 50 3e-05
gb|AAC50134.1| putative transmembrane protein 50 3e-05
>dbj|BAA97517.1| gene_id:F24B18.6~unknown protein [Arabidopsis thaliana]
Length = 1280
Score = 384 bits (985), Expect = e-105
Identities = 184/218 (84%), Positives = 194/218 (88%)
Frame = +3
Query: 114 MANFLAQFQTIKNSSDRLVISVEDVSDLWPTVKPAFEARLPFKKASLNNKTRNPVLVETL 293
MAN+LAQFQTIKNS DRLV +VEDV DLWPTVK FE P K+A L NKTRNPV VE L
Sbjct: 1 MANYLAQFQTIKNSCDRLVAAVEDVCDLWPTVKGLFEEHQPLKRAFLTNKTRNPVFVENL 60
Query: 294 PAEFILTTDSRLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLKLIVQNDER 473
P EFILTTD+RLRSRFPQEQ LFWFREPYAT+VLVTCEDLDEFK ILKPRLKLIVQNDER
Sbjct: 61 PVEFILTTDARLRSRFPQEQYLFWFREPYATIVLVTCEDLDEFKNILKPRLKLIVQNDER 120
Query: 474 EWFIVFVSKAHPANDQASKMAKKVYAKLEVEFSSKKRERCCKYDMHFPEANFWEDLESKI 653
EWFIVFVSKAHP+NDQA+K KKVYAKLEV+FSSKKRERCCK D+H PE NFWEDLE KI
Sbjct: 121 EWFIVFVSKAHPSNDQATKNVKKVYAKLEVDFSSKKRERCCKLDVHGPEGNFWEDLELKI 180
Query: 654 TECIRNTLDRRVQFYEDEIRKLSEQRLMPVWNFCNFFI 767
TECIRNTLDRR QFYEDEIRKLSEQR MP+WNFCNFFI
Sbjct: 181 TECIRNTLDRRAQFYEDEIRKLSEQRFMPIWNFCNFFI 218
>gb|AAO51446.1| similar to Arabidopsis thaliana (Mouse-ear cress). Genomic DNA,
chromosome 5, BAC clone:F24B18 [Dictyostelium
discoideum]
Length = 1442
Score = 103 bits (257), Expect = 3e-21
Identities = 65/238 (27%), Positives = 118/238 (49%), Gaps = 36/238 (15%)
Frame = +3
Query: 159 DRLVISVEDVSDLWPTVKPAFEARLPFKKASLNNKTRNPVLVETLPAEFILTTDSRLRSR 338
+ + IS +D S +W ++ LP K S KT + +VE +P E + D R+++
Sbjct: 96 EHITISYQDESSIWKYIEAELPNHLPLKNISWKTKTGHTKVVEKMPIEILQYNDERVKAH 155
Query: 339 FPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRLK-LIVQNDER--EWFIVFVSKAHP 509
+ + L +++PY + LV C+D D +K +++ ++K + Q ER EW IV+VS
Sbjct: 156 YDNQNL---YKKPYLYLYLVHCDDPDTYKNVVRAKIKQWVTQMTERQQEWLIVYVSLGPK 212
Query: 510 A-NDQASKMAKKVYAKLEVEFSSKKRERCCKYDMHFPEAN-------------------- 626
++ SK+ + V+ +++ +F + KR+RCC+ + F + N
Sbjct: 213 RFSELTSKLTRTVFDRIKNDF-NVKRDRCCQ--LRFLDTNNTSSGNNKDKDNDNGGGSSG 269
Query: 627 ------------FWEDLESKITECIRNTLDRRVQFYEDEIRKLSEQRLMPVWNFCNFF 764
W+D K+ E I ++ ++ + YEDEIRK+ +R P W++ NFF
Sbjct: 270 TGLSTSTKQQDDLWDDFLIKMKEGIISSAEQYLTTYEDEIRKMDAKRTTPGWSYQNFF 327
>gb|EAA30402.1| hypothetical protein [Neurospora crassa]
Length = 1631
Score = 53.1 bits (126), Expect = 4e-06
Identities = 24/48 (50%), Positives = 31/48 (64%)
Frame = +3
Query: 624 NFWEDLESKITECIRNTLDRRVQFYEDEIRKLSEQRLMPVWNFCNFFI 767
N W+DL KI E I ++ D RV YE++I+ QR +P WNFC FFI
Sbjct: 288 NAWQDLIGKIKELILSSFDIRVTQYEEDIKDKDAQRGLPGWNFCTFFI 335
>gb|AAH46241.1| Similar to transmembrane protein 1 [Homo sapiens]
Length = 276
Score = 50.4 bits (119), Expect = 3e-05
Identities = 39/217 (17%), Positives = 90/217 (40%), Gaps = 9/217 (4%)
Frame = +3
Query: 144 IKNSSDRLVISVEDVSDLWPTVKPAFEARLPFKKASLNNKTRNPVLVETLPAEFILTTDS 323
I ++ +++ +L+ +V P +LP + + L + F+ +
Sbjct: 12 IYTMENKPIVTCAGDQNLFTSVYPTLSQQLPREPMEWRRSYGRAPKMIHLESNFVQFKEE 71
Query: 324 RLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRL----KLIVQNDEREWFIVF 491
L + L F P+ + C D + +K +K L ++ + +W IV
Sbjct: 72 LLPKEGNKALLTF----PFLHIYWTECCDTEVYKATVKDDLTKWQNVLKAHSSVDWLIVI 127
Query: 492 VSKAHPANDQASKMAK-KVYAKLEVEFSSKKRERCCKYDMHFPEAN----FWEDLESKIT 656
V ++ + + + + K+ +F +K+ +RC +++ W +K+
Sbjct: 128 VENDAKKKNKTNILPRTSIVDKIRNDFCNKQSDRCVVLSDPLKDSSRTQESWNAFLTKLR 187
Query: 657 ECIRNTLDRRVQFYEDEIRKLSEQRLMPVWNFCNFFI 767
+ + + + +ED++R L E+R P W+FC +F+
Sbjct: 188 TLLLMSFTKNLGKFEDDMRTLREKRTEPGWSFCEYFM 224
>gb|AAC50134.1| putative transmembrane protein
Length = 1190
Score = 50.4 bits (119), Expect = 3e-05
Identities = 39/217 (17%), Positives = 90/217 (40%), Gaps = 9/217 (4%)
Frame = +3
Query: 144 IKNSSDRLVISVEDVSDLWPTVKPAFEARLPFKKASLNNKTRNPVLVETLPAEFILTTDS 323
I ++ +++ +L+ +V P +LP + + L + F+ +
Sbjct: 12 IYTMENKPIVTCAGDQNLFTSVYPTLSQQLPREPMEWRRSYGRAPKMIHLESNFVQFKEE 71
Query: 324 RLRSRFPQEQLLFWFREPYATVVLVTCEDLDEFKTILKPRL----KLIVQNDEREWFIVF 491
L + L F P+ + C D + +K +K L ++ + +W IV
Sbjct: 72 LLPKEGNKALLTF----PFLHIYWTECCDTEVYKATVKDDLTKWQNVLKAHSSVDWLIVI 127
Query: 492 VSKAHPANDQASKMAK-KVYAKLEVEFSSKKRERCCKYDMHFPEAN----FWEDLESKIT 656
V ++ + + + + K+ +F +K+ +RC +++ W +K+
Sbjct: 128 VENDAKKKNKTNILPRTSIVDKIRNDFCNKQSDRCVVLSDPLKDSSRTQESWNAFLTKLR 187
Query: 657 ECIRNTLDRRVQFYEDEIRKLSEQRLMPVWNFCNFFI 767
+ + + + +ED++R L E+R P W+FC +F+
Sbjct: 188 TLLLMSFTKNLGKFEDDMRTLREKRTEPGWSFCEYFM 224
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 655,657,107
Number of Sequences: 1393205
Number of extensions: 14211925
Number of successful extensions: 41003
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 39059
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40970
length of database: 448,689,247
effective HSP length: 121
effective length of database: 280,111,442
effective search space used: 37534933228
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
