Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014235A_C01 KMC014235A_c01
(578 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAB01660.1| putative RNA helicase A 47 2e-04
ref|NP_180638.2| hypothetical protein; protein id: At2g30800.1, ... 47 2e-04
gb|AAM14828.1| putative RNA helicase A [Arabidopsis thaliana] 47 2e-04
dbj|BAC10766.1| putative DEIH-box RNA/DNA helicase [Oryza sativa... 44 0.001
ref|NP_172152.1| DEIH-box RNA/DNA helicase; protein id: At1g0667... 43 0.003
>gb|AAB01660.1| putative RNA helicase A
Length = 1291
Score = 47.0 bits (110), Expect = 2e-04
Identities = 23/33 (69%), Positives = 27/33 (81%)
Frame = -1
Query: 461 FQVTHPRKPLPPILEASMHAIACILSCDGCSGM 363
F+VTHPR+ LPP L ASMHAIA ILS DG +G+
Sbjct: 1069 FKVTHPREHLPPHLGASMHAIAGILSYDGHAGL 1101
>ref|NP_180638.2| hypothetical protein; protein id: At2g30800.1, supported by cDNA:
gi_1353238 [Arabidopsis thaliana]
Length = 1072
Score = 47.0 bits (110), Expect = 2e-04
Identities = 23/33 (69%), Positives = 27/33 (81%)
Frame = -1
Query: 461 FQVTHPRKPLPPILEASMHAIACILSCDGCSGM 363
F+VTHPR+ LPP L ASMHAIA ILS DG +G+
Sbjct: 850 FKVTHPREHLPPHLGASMHAIAGILSYDGHAGL 882
>gb|AAM14828.1| putative RNA helicase A [Arabidopsis thaliana]
Length = 1114
Score = 47.0 bits (110), Expect = 2e-04
Identities = 23/33 (69%), Positives = 27/33 (81%)
Frame = -1
Query: 461 FQVTHPRKPLPPILEASMHAIACILSCDGCSGM 363
F+VTHPR+ LPP L ASMHAIA ILS DG +G+
Sbjct: 892 FKVTHPREHLPPHLGASMHAIAGILSYDGHAGL 924
>dbj|BAC10766.1| putative DEIH-box RNA/DNA helicase [Oryza sativa (japonica
cultivar-group)]
Length = 1211
Score = 43.9 bits (102), Expect = 0.001
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Frame = -1
Query: 461 FQVTHPRKPLPPILEASMHAIACILSCDGCSGMPVIADGLDILTTMVDDTNLGKQA--TG 288
F+V HP+ LPP L A+M+AIACILS D G+P + D+ T+ + + + + +
Sbjct: 1075 FKVKHPQDVLPPDLGATMYAIACILSYD---GLPAMITSDDVATSQGSNQSSAESSRFSQ 1131
Query: 287 TKRLGKRPKG 258
+R+G P G
Sbjct: 1132 GRRVGYIPPG 1141
>ref|NP_172152.1| DEIH-box RNA/DNA helicase; protein id: At1g06670.1 [Arabidopsis
thaliana]
Length = 1576
Score = 42.7 bits (99), Expect = 0.003
Identities = 22/51 (43%), Positives = 33/51 (64%)
Frame = -1
Query: 461 FQVTHPRKPLPPILEASMHAIACILSCDGCSGMPVIADGLDILTTMVDDTN 309
F+V HP++ LPP L ASM+AIA +LS D + V + +T++VD T+
Sbjct: 1089 FKVKHPKENLPPHLGASMYAIASVLSYDSLAQSSVQTVAVQPITSVVDATS 1139
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 506,196,778
Number of Sequences: 1393205
Number of extensions: 11440093
Number of successful extensions: 24910
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 23130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24893
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
