Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014228A_C01 KMC014228A_c01
(592 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_194876.1| putative protein; protein id: At4g31480.1 [Arab... 249 2e-65
ref|NP_194877.1| Beta-COP-like protein; protein id: At4g31490.1 ... 248 3e-65
dbj|BAB17749.1| putative coatmer beta subunit (beta-coat protein... 226 2e-58
gb|AAF62179.1|AF247143_1 beta-COP protein [Dictyostelium discoid... 164 8e-40
gb|EAA01097.1| agCP12209 [Anopheles gambiae str. PEST] 148 6e-35
>ref|NP_194876.1| putative protein; protein id: At4g31480.1 [Arabidopsis thaliana]
gi|7447850|pir||T10678 hypothetical protein F3L17.50 -
Arabidopsis thaliana gi|5262759|emb|CAB45907.1| putative
protein [Arabidopsis thaliana]
gi|7270051|emb|CAB79866.1| putative protein [Arabidopsis
thaliana]
Length = 971
Score = 249 bits (636), Expect = 2e-65
Identities = 119/143 (83%), Positives = 137/143 (95%)
Frame = +3
Query: 162 KQMEKSCSWVVHFDKGTPALANEIKESLEGNDVGAKIDALKKAIMLLLNGETIPQLFITI 341
++M+KS + +VH+DKGTPA+ANEIKE+LEGNDV AK+DA+KKAIMLLLNGETIPQLFITI
Sbjct: 22 EKMDKSSTMLVHYDKGTPAVANEIKEALEGNDVEAKVDAMKKAIMLLLNGETIPQLFITI 81
Query: 342 IRYVLPSEDHTVQKLLLLYLEIIDKTDSRGKVLPEMILICQNLRNNLQHPNEYIRGVTLR 521
IRYVLPSEDHT+QKLLLLYLE+I+KTDS+GKVLPEMILICQNLRNNLQHPNEYIRGVTLR
Sbjct: 82 IRYVLPSEDHTIQKLLLLYLELIEKTDSKGKVLPEMILICQNLRNNLQHPNEYIRGVTLR 141
Query: 522 FLCRLNESEIIEPLIPSILSNLE 590
FLCR+ E+EI+EPL PS+L NLE
Sbjct: 142 FLCRMKETEIVEPLTPSVLQNLE 164
>ref|NP_194877.1| Beta-COP-like protein; protein id: At4g31490.1 [Arabidopsis
thaliana] gi|7447851|pir||T10679 hypothetical protein
F3L17.60 - Arabidopsis thaliana
gi|5262760|emb|CAB45908.1| Beta-COP-like protein
[Arabidopsis thaliana] gi|7270052|emb|CAB79867.1|
Beta-COP-like protein [Arabidopsis thaliana]
Length = 958
Score = 248 bits (634), Expect = 3e-65
Identities = 119/141 (84%), Positives = 135/141 (95%)
Frame = +3
Query: 168 MEKSCSWVVHFDKGTPALANEIKESLEGNDVGAKIDALKKAIMLLLNGETIPQLFITIIR 347
M+KS + +VH+DKGTPA+ANEIKE+LEGNDV AK+DA+KKAIMLLLNGETIPQLFITIIR
Sbjct: 1 MDKSSTMLVHYDKGTPAVANEIKEALEGNDVEAKVDAMKKAIMLLLNGETIPQLFITIIR 60
Query: 348 YVLPSEDHTVQKLLLLYLEIIDKTDSRGKVLPEMILICQNLRNNLQHPNEYIRGVTLRFL 527
YVLPSEDHT+QKLLLLYLE+I+KTDS+GKVLPEMILICQNLRNNLQHPNEYIRGVTLRFL
Sbjct: 61 YVLPSEDHTIQKLLLLYLELIEKTDSKGKVLPEMILICQNLRNNLQHPNEYIRGVTLRFL 120
Query: 528 CRLNESEIIEPLIPSILSNLE 590
CR+ E+EI+EPL PS+L NLE
Sbjct: 121 CRMKETEIVEPLTPSVLQNLE 141
>dbj|BAB17749.1| putative coatmer beta subunit (beta-coat protein) (beta-COP) [Oryza
sativa (japonica cultivar-group)]
gi|13873019|dbj|BAB44123.1| putative coatmer beta
subunit (beta-coat protein) (beta-COP) [Oryza sativa
(japonica cultivar-group)]
Length = 1036
Score = 226 bits (576), Expect = 2e-58
Identities = 111/159 (69%), Positives = 133/159 (82%), Gaps = 1/159 (0%)
Frame = +3
Query: 117 LQSPHPLSPNCS-SDLKQMEKSCSWVVHFDKGTPALANEIKESLEGNDVGAKIDALKKAI 293
+Q P P SP + MEK + +VHFDKG+ A+A EIK LEG+DV AK+DA+K+A+
Sbjct: 69 IQPPPPPSPAGGVARSGAMEKPSTLLVHFDKGSAAMAGEIKADLEGSDVAAKVDAMKRAV 128
Query: 294 MLLLNGETIPQLFITIIRYVLPSEDHTVQKLLLLYLEIIDKTDSRGKVLPEMILICQNLR 473
MLLLNGET+P LFIT++RYVLPSEDHT+QKLLLLYLEIIDK D+ G+ LPEMILICQNLR
Sbjct: 129 MLLLNGETLPTLFITVVRYVLPSEDHTIQKLLLLYLEIIDKRDAAGRGLPEMILICQNLR 188
Query: 474 NNLQHPNEYIRGVTLRFLCRLNESEIIEPLIPSILSNLE 590
NNL HPNEYIRGVTLRFLCRL+E E++EPL+PSIL NL+
Sbjct: 189 NNLHHPNEYIRGVTLRFLCRLSEPEVLEPLVPSILENLD 227
>gb|AAF62179.1|AF247143_1 beta-COP protein [Dictyostelium discoideum]
Length = 912
Score = 164 bits (415), Expect = 8e-40
Identities = 76/141 (53%), Positives = 106/141 (74%)
Frame = +3
Query: 168 MEKSCSWVVHFDKGTPALANEIKESLEGNDVGAKIDALKKAIMLLLNGETIPQLFITIIR 347
+EK C+ ++++DKG P NE K++ E KI+ LKK I+ +NGE IPQL + II
Sbjct: 10 IEKPCTILINYDKGDPPQVNEFKQNFEHGTTEQKIETLKKVILYTINGEPIPQLLMPIIL 69
Query: 348 YVLPSEDHTVQKLLLLYLEIIDKTDSRGKVLPEMILICQNLRNNLQHPNEYIRGVTLRFL 527
YV+PS DHT++KLLL+Y E+I+KT GK+ EMIL+C +L N+L HPNE++RG TLRFL
Sbjct: 70 YVMPSNDHTIKKLLLIYWEVIEKT-HLGKLKSEMILVCNSLLNDLNHPNEFVRGSTLRFL 128
Query: 528 CRLNESEIIEPLIPSILSNLE 590
C+L E+E++EPL+PS+ SNLE
Sbjct: 129 CKLREAEVLEPLVPSVRSNLE 149
>gb|EAA01097.1| agCP12209 [Anopheles gambiae str. PEST]
Length = 962
Score = 148 bits (373), Expect = 6e-35
Identities = 68/121 (56%), Positives = 94/121 (77%)
Frame = +3
Query: 228 EIKESLEGNDVGAKIDALKKAIMLLLNGETIPQLFITIIRYVLPSEDHTVQKLLLLYLEI 407
+IK+ LE +V KI+ +KK I L+L GE +P L +TIIR+VLP ++HT++KLLL+Y EI
Sbjct: 38 QIKQDLEKGEVNVKIETMKKVIQLMLQGERLPNLLMTIIRFVLPLQNHTLKKLLLIYWEI 97
Query: 408 IDKTDSRGKVLPEMILICQNLRNNLQHPNEYIRGVTLRFLCRLNESEIIEPLIPSILSNL 587
+ KT GK+L EMIL+C R +LQHPNE++RG TLRFLC+L E E++EPL+P+I S+L
Sbjct: 98 VPKTSPDGKLLQEMILVCDAYRKDLQHPNEFLRGATLRFLCKLKEPELLEPLMPTIRSSL 157
Query: 588 E 590
E
Sbjct: 158 E 158
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 555,456,123
Number of Sequences: 1393205
Number of extensions: 13699857
Number of successful extensions: 105955
Number of sequences better than 10.0: 2185
Number of HSP's better than 10.0 without gapping: 66276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90228
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
