Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC014227A_C01 KMC014227A_c01
(608 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_176295.1| hypothetical protein; protein id: At1g60990.1 [... 108 5e-23
gb|ZP_00106552.1| hypothetical protein [Nostoc punctiforme] 56 4e-07
ref|ZP_00072182.1| hypothetical protein [Trichodesmium erythraeu... 54 1e-06
ref|NP_488095.1| glycine cleavage T-protein; aminomethyltransfer... 50 2e-05
ref|NP_682739.1| ORF_ID:tlr1949~hypothetical protein [Thermosyne... 46 4e-04
>ref|NP_176295.1| hypothetical protein; protein id: At1g60990.1 [Arabidopsis
thaliana] gi|25404301|pir||E96635 hypothetical protein
T7P1.13 [imported] - Arabidopsis thaliana
gi|12323347|gb|AAG51655.1|AC018908_21 hypothetical
protein; 60474-57856 [Arabidopsis thaliana]
Length = 436
Score = 108 bits (270), Expect = 5e-23
Identities = 53/81 (65%), Positives = 65/81 (79%)
Frame = -3
Query: 606 GFHLSAAAEPASIITVDGKKIGKLTSYTSGRKQSEHFGLGYIKRQAALEGDTVIVGDNIS 427
G +LSA +EP S ITVDGKK+GKLTSYT G+ S HFGLGYIK+QAA G+TV VG++IS
Sbjct: 356 GLNLSAPSEPGSTITVDGKKVGKLTSYTGGKNGSGHFGLGYIKKQAASIGNTVTVGEDIS 415
Query: 426 GTVVEVPFLYQQRPPSGSSTS 364
G V EVP+L +Q PPS +S+S
Sbjct: 416 GIVSEVPYLARQHPPSANSSS 436
>gb|ZP_00106552.1| hypothetical protein [Nostoc punctiforme]
Length = 331
Score = 55.8 bits (133), Expect = 4e-07
Identities = 33/74 (44%), Positives = 43/74 (57%)
Frame = -3
Query: 606 GFHLSAAAEPASIITVDGKKIGKLTSYTSGRKQSEHFGLGYIKRQAALEGDTVIVGDNIS 427
G LSA E S I V +K+GKLTSYT +FGLGYI+ +A G V VG+
Sbjct: 261 GIRLSAPVEVGSAIAVGDEKVGKLTSYT--ETADGYFGLGYIRTKAGGVGLKVKVGET-E 317
Query: 426 GTVVEVPFLYQQRP 385
G V+E+PF+ + P
Sbjct: 318 GEVIEIPFVSHEYP 331
>ref|ZP_00072182.1| hypothetical protein [Trichodesmium erythraeum IMS101]
Length = 349
Score = 54.3 bits (129), Expect = 1e-06
Identities = 31/72 (43%), Positives = 42/72 (58%)
Frame = -3
Query: 606 GFHLSAAAEPASIITVDGKKIGKLTSYTSGRKQSEHFGLGYIKRQAALEGDTVIVGDNIS 427
G L+ E +++ + KK+GKLTS+T +FGL YIK +A G V VGD +
Sbjct: 277 GVRLNGKVELGNVVQIGDKKVGKLTSFT--ETNEGYFGLAYIKTKAGGVGLKVQVGD-VE 333
Query: 426 GTVVEVPFLYQQ 391
G +VEVPFL Q
Sbjct: 334 GEIVEVPFLTHQ 345
>ref|NP_488095.1| glycine cleavage T-protein; aminomethyltransferase [Nostoc sp. PCC
7120] gi|25534702|pir||AH2312 glycine cleavage T-protein
(aminomethyltransferase) [imported] - Nostoc sp. (strain
PCC 7120) gi|17133190|dbj|BAB75754.1| glycine cleavage
T-protein; aminomethyltransferase [Nostoc sp. PCC 7120]
Length = 327
Score = 50.1 bits (118), Expect = 2e-05
Identities = 31/74 (41%), Positives = 41/74 (54%)
Frame = -3
Query: 606 GFHLSAAAEPASIITVDGKKIGKLTSYTSGRKQSEHFGLGYIKRQAALEGDTVIVGDNIS 427
G L+A AE I + +K+GKLTSYT +FGL YI+ +A G V VG N
Sbjct: 257 GIRLNAPAEIGDSINIGDEKVGKLTSYT--ETPDGYFGLAYIRSKAGGVGLKVQVG-NSE 313
Query: 426 GTVVEVPFLYQQRP 385
G VV +PF+ + P
Sbjct: 314 GEVVAIPFVSHEYP 327
>ref|NP_682739.1| ORF_ID:tlr1949~hypothetical protein [Thermosynechococcus elongatus
BP-1] gi|22295675|dbj|BAC09501.1|
ORF_ID:tlr1949~hypothetical protein [Thermosynechococcus
elongatus BP-1]
Length = 313
Score = 45.8 bits (107), Expect = 4e-04
Identities = 25/69 (36%), Positives = 40/69 (57%)
Frame = -3
Query: 606 GFHLSAAAEPASIITVDGKKIGKLTSYTSGRKQSEHFGLGYIKRQAALEGDTVIVGDNIS 427
G L+A P + + ++G+K+G +TS T K + FGLGY++ + G T+ + +
Sbjct: 243 GLELTATVTPPTPLILEGEKVGLVTSCTPLGKGA--FGLGYVRTKVGGPGLTLHTPEGVM 300
Query: 426 GTVVEVPFL 400
VVEVPFL
Sbjct: 301 AQVVEVPFL 309
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 549,905,906
Number of Sequences: 1393205
Number of extensions: 12190188
Number of successful extensions: 29729
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 28872
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29711
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
